US20110003008A1 - Mesenchymal stem cell particles - Google Patents

Mesenchymal stem cell particles Download PDF

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US20110003008A1
US20110003008A1 US12/918,122 US91812209A US2011003008A1 US 20110003008 A1 US20110003008 A1 US 20110003008A1 US 91812209 A US91812209 A US 91812209A US 2011003008 A1 US2011003008 A1 US 2011003008A1
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exosome
disease
mesenchymal stem
ligand
protein
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Sai Kiang Lim
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Agency for Science Technology and Research Singapore
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    • A61K35/28—Bone marrow; Haematopoietic stem cells; Mesenchymal stem cells of any origin, e.g. adipose-derived stem cells
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Definitions

  • the present invention relates to the fields of development, cell biology, molecular biology and genetics. More particularly, the invention relates to a method of deriving mesenchymal stem cells from embryonic stem cells.
  • Stem cells unlike differentiated cells, have the capacity to divide and either self-renew or differentiate into phenotypically and functionally different daughter cells (Keller, Genes Dev. 2005; 19:1129-1155; Wobus and Boheler, Physiol Rev. 2005; 85:635-678; Wiles, Methods in Enzymology. 1993; 225:900-918; Choi et al, Methods Mol Med. 2005; 105:359-368).
  • MSCs Mesenchymal stem cells
  • BM bone marrow
  • adipose tissues ad
  • Mesenchymal stem cells have been used in clinical and preclinical applications to treat a wide range of diseases 1,2 including musculoskeletal tissue bioengineering 3,4 and heart disease 5,6 .
  • the therapeutic capacity of MSCs to treat a wide spectrum of diseases in clinical and preclinical applications to treat a wide range of diseases [A1,A2] e.g. GVHD [A1] in musculoskeletal tissue bioengineering [A3,A4] and heart disease [A5,A6] has been attributed to their potential to differentiate into many different reparative cell types.
  • the biological property may comprise a biological activity of a mesenchymal stem cell conditioned medium (MSC-CM).
  • the biological activity may comprise cardioprotection.
  • the particle may be capable of reducing infarct size.
  • Reduction of infarct may be assayed in a mouse or pig model of myocardial ischemia and reperfusion injury.
  • the particle may be capable of reducing oxidative stress.
  • the reduction of oxidative stress may be assayed in an in vitro assay of hydrogen peroxide (H 2 O 2 )-induced cell death.
  • the particle comprise a vesicle.
  • the particle may comprise an exosome.
  • the particle may contain at least 70% of proteins in an mesenchymal stem cell conditioned medium (MSC-CM).
  • the proteins may be selected from the list shown in Table D1 or may be gene products of the genes shown in Table D2.
  • the particle may comprise a complex of molecular weight >100 kDa.
  • the complex of molecular weight >100 kDa may comprise proteins of ⁇ 100 kDa.
  • the particle may comprise a complex of molecular weight >300 kDa.
  • the complex of molecular weight >100 kDa may comprise proteins of ⁇ 300 kDa.
  • the particle may comprise a complex of molecular weight >1000 kDa.
  • the particle may have a size of between 2 nm and 200 nm.
  • the particle may have a size of between 50 ⁇ m and 150 nm.
  • the particle may have a size of between 50 nm and 100 nm.
  • the size of the particle may be determined by filtration against a 0.2 ⁇ M filter and concentration against a membrane with a molecular weight cut-off of 10 kDa.
  • the size of the particle may be determined by electron microscopy.
  • the particle may comprise a hydrodynamic radius of below 100 nm. It may comprise a hydrodynamic radius of between about 30 nm and about 70 nm. It may be between about 40 nm and about 60 nm, such as between about 45 nm and about 55 nm.
  • the mesenchymal stem cell particle may comprise a hydrodynamic radius of about 50 nm. The hydrodynamic radius may be determined by laser diffraction or dynamic light scattering.
  • the particle may comprise a lipid selected from the group consisting of: phospholipid, phosphatidyl serine, phosphatidyl inositol, phosphatidyl choline, shingomyelin, ceramides, glycolipid, cerebroside, steroids, cholesterol.
  • the cholesterol-phospholipid ratio may be greater than 0.3-0.4 (mol/mol).
  • the particle may comprise a lipid raft.
  • the particle may be insoluble in non-ionic detergent, preferably Triton-X100.
  • the particle may be such that proteins of the molecular weights specified substantially remain in the complexes of the molecular weights specified, when the particle is treated with a non-ionic detergent.
  • the particle may be sensitive to cyclodextrin, preferably 20 mM cyclodextrin.
  • the particle may be such that treatment with cyclodextrin causes substantial dissolution of the complexes specified.
  • the particle may comprise ribonucleic acid (RNA).
  • RNA ribonucleic acid
  • the particle may have an absorbance ratio of 1.9 (260:280 nm).
  • the particle may comprise a surface antigen selected from the group consisting of: CD9, CD109 and thy-1.
  • a method of producing a particle according to any preceding claim comprising isolating the particle from a mesenchymal stem cell conditioned medium (MSC-CM).
  • MSC-CM mesenchymal stem cell conditioned medium
  • the method may comprise separating the particle from other components based on molecular weight, size, shape, composition or biological activity.
  • the weight may be selected from the weights set out above.
  • the size may be selected from the sizes set out above.
  • the composition may be selected from the compositions set out above.
  • the biological activity may be selected from the biological activities set out above.
  • the method may comprise obtaining a mesenchymal stem cell conditioned medium (MSC-CM). It may comprise concentrating the mesenchymal stem cell conditioned medium.
  • the mesenchymal stem cell conditioned medium may be concentrated by ultrafiltration over a >1000 kDa membrane.
  • the method may comprise subjecting the concentrated mesenchymal stem cell conditioned medium to size exclusion chromatography.
  • a TSK Guard column SWXL, 6 ⁇ 40 mm or a TSK gel G4000 SWXL, 7.8 ⁇ 300 mm column may be employed.
  • the method may comprise selecting UV absorbant fractions, for example, at 220 nm, that exhibit dynamic light scattering.
  • the dynamic light scattering may be detected by a quasi-elastic light scattering (QELS) detector.
  • the method may comprise collecting fractions which elute with a retention time of 11-13 minutes, such as 12 minutes.
  • a pharmaceutical composition comprising a particle as described together with a pharmaceutically acceptable excipient, diluent or carrier.
  • such a particle or such a pharmaceutical composition for use in a method of treating a disease.
  • the present invention in a 6 th aspect, provides use of such a particle in a method of treatment of a disease in an individual.
  • the disease may be selected from the group consisting of: cardiac failure, bone marrow disease, skin disease, burns and degenerative diseases such as diabetes, Alzheimer's disease, Parkinson's disease and cancer.
  • the disease may be selected from the group consisting of: myocardial infarction, a cutaneous wound, a dermatologic disorder, a dermatological lesion, dermatitis, psoriasis, condyloma, verruca, hemangioma, keloid, skin cancer, atopic dermatitis, Behcet disease, chronic granulomatous disease, cutaneous T cell lymphoma, ulceration, a pathological condition characterised by initial injury inducing inflammation and immune dysregulation leading to chronic tissue remodeling including fibrosis and loss of function, renal ischemic injury, cystic fibrosis, sinusitis and rhinitis or an orthopaedic disease.
  • the particle may be used to aid wound healing, scar reduction, bone formation, a bone graft or bone marrow transplantation in an individual.
  • the particle may be used (i) in the regulation of a pathway selected from any one or more of the following: cytoskeletal regulation by Rho GTPase, cell cycle, integrin signalling pathway, Inflammation mediated by chemokine & cytokine signaling pathway, FGF signaling pathway, EGF receptor signaling pathway, angiogenesis, plasminogen activating cascade, blood coagulation, glycolysis, ubiquitin proteasome pathway, de novo purine biosynthesis, TCA cycle, phenylalanine biosynthesis, heme biosynthesis; (ii) in the regulation of processes including any one or more of the following: cell structure and motility, cell structure, cell communication, cell motility, cell adhesion, endocytosis, mitosis, exocytosis, cytokinesis, cell cycle, immunity and defense, cytokine/chemokine mediated immunity, macrophage-mediated immunity, granulocyte-mediated immunity, ligand-mediated signaling, cytokine and chemokine mediated signal
  • a delivery system for delivering a particle comprising a source of particle together with a dispenser operable to deliver the particle to a target.
  • FIG. 3 Oxidative Stress. Viability of CEM cells in either CM or Non-CM and treated with H 2 O 2 . (* p ⁇ 0.05, A). Conditioned medium protects cells from death induced by H 2 O 2 .
  • Infarct area sections from pigs treated with Non-CM (B), CM (C), or saline (D) were stained for 8-OHdG, a product of nuclear oxidative stress. Quantification of 8-OHdG positive nuclei was assessed at 200 ⁇ magnification and is depicted in Figure E.
  • CM reduces oxidative stress.
  • FIG. 4 TGF- ⁇ Signaling and Apoptosis.
  • Beta-tubulin was assessed as a loading control, and no differences were found in beta-tubulin expression between the groups (E).
  • FIG. 6 Chemically defined medium conditioned by hESC-MSC HuES9.E1 cells for three days was filtered through a 0.22 ⁇ filter.
  • the conditioned medium (CM) was concentrated 25 times by filtering through a membrane with a 10 kD MW cut-off.
  • the concentrated CM was then centrifuged through a membrane with either a 100 kD or a 300 kD MW cut-off resulting in a 4:1 (vol:vol) filtrate to retentate ratio.
  • the unfractionated CM, filtrate and retentate samples were loaded in the volume ratio of 5:4:1
  • FIG. 7 Identity of components in the filtrate after filtration through a membrane with a 100 kD MW cut-off.
  • NCM non-conditioned medium
  • CM Conditioned medium
  • the filtrate after CM was filtered through membrane with a 100 kD MW cut-off (100 kD filtrate) and NCM was separated on a SDS-PAGE. The gel was stained with silver to visualize protein bands;
  • CM was filtered through a 100 kD MW cut-off membrane to produce a retentate to filtrate volume ratio of 4:1.
  • the retentate, filtrate, and the different protein supplements in the chemically defined medium namely insulin-transferin-selenoprotein, FGF2, EGF and PDGF AB were separated on a SDS-PAGE
  • the retentate and filtrate was loaded in a volume ratio of 4:1
  • FIG. 8 Relative sizes of biological materials and pore sizes in membranes. Reprint from Spectrum ⁇ Laboratory.
  • FIG. 9 Relative AAR in mice after ischemia/reperfusion.
  • Myocardial infarction was induced by left coronary artery (LCA) occlusion by suture ligation for 30 minutes, and reperfusion was initiated by removal of suture.
  • mice Five minutes before reperfusion, mice were treated with tail vein injection of 20 ⁇ l unfractionated MSC-CM (10-220 nm), 20 ⁇ l of ⁇ 100 or 1,000 kD fraction, 4 ⁇ l of >1000 kD retentate or saline. 24 hours later, the hearts were excised. Before excision, the Area At Risk (AAR) was determined by religating the LCA and then perfusing Evans blue through the aorta. AAR was defined as the area not stained by the dye and was expressed as a percentage of the left ventricular wall area.
  • AAR Area At Risk
  • FIG. 10 Effects of conditioned media and fractionated conditioned media on relative infarct size in mice after ischemia/reperfusion. After excision of the heart, infarct size was assessed 24 hours later using TTC and expressed as a percentage of AAR.
  • FIG. 11 Physical entities of between 50-100 nm in diameter were observed using electron microscopy.
  • FIG. 12 Size fractionation of CM after treatment with Triton X-100, CM was treated with a final 0.5 or 1.0% (v/v) TritonX-100 for 30 minutes and then fractionate by filtration through a membrane with MW cut-off of 100 kD to generate a filtrate:retentate volume ratio of 4:1.
  • FIG. 13 Proteins found from MS/MS analysis that are common to exosomes from different cell types 44 .
  • FIG. 14 Cardioprotective Properties of CM Fractions. Myocardial infarct size quantification in mice treated with saline, HEK293 conditioned medium, unfractionated hESC-CM, CM filtered with MWCO of 100 kDa, 300 kDa, 500 kDa, and 1000 kDa or CM concentrated 50 times against membrane with MWCO of 100 kDa fraction of CM or unfractionated CM.
  • FIG. 15 Immunoprecipitation. CM immunoprecipitated with anti-CD81 or mouse IgG as negative control. The immunoprecipitate and supernatant were analysed by western blot hybridization using antibody against CD9, Alix, Tsp-1, pyruvate kinase and SOD1.
  • FIG. 16 Ultracentrifugation of CM.
  • CM was concentrated five times by filtering through a membrane with MWCO of 500 kDa.
  • the retentate, and the unfiltered CM were ultracentrifuged at 200,000 g for 2 hour. The supernatant and the pellet were analysed by western blotting for the presence of CD9.
  • Lane 1-3 different protein concentration of CM.
  • Lane 4 and 5 The pellet (P) and supernatant (S) after ultracentrifugation of unfiltered CM.
  • Lane 6 Retentate after filteration of CM through a membrane with MWCO of 500 kDa.
  • Lane 7-8 The pellet (P) and supernatant (S) after ultracentrifugation of retentate.
  • Lane 9 Filtrate after after filteration of CM through a membrane with MWCO of 500 kDa.
  • FIG. 17 Fractionation on sucrose gradient density.
  • a sucrose density gradient was prepared by layering 14 sucrose solutions of concentrations from 22.8-60% (w/v) in a SW60Ti centrifuge tube with the most concentrated solution at the bottom of the ultracentrifuge tube. The sample was loaded on top of the gradient and ultracentrifuged for 16.5 hours at 200,000 ⁇ g, 4° C. in a SW60Ti rotor (Beckman Coulter Inc.). 13 fractions were collected from top to the bottom of the sucrose gradient. The density of each fraction was calculated by weighing a fixed volume of each fraction. The fractions were then analysed by western blot analysis and probed for pyruvate kinase, CD9, CD81 and SOD1.
  • Protein standard molecular weight markers were fractionated on a similar gradient and the distribution of the markers in the different fractions of the sucrose gradient were denoted at the bottom of the figure. a) CM was fractionated, b) CM was treated with lysis buffer before being fractionated on the sucrose gradient.
  • FIG. 18 Trypsinization of CM.
  • CM was digested with trypsin for 0, 0.5, 2, 10 and 20 mins.
  • the partially digested CM was analysed for the presence of CD9 and SOD1.
  • FIG. 19 Analysis of RNA in the CM.
  • RNA was extracted from MSCs and MSC-CM. The purified RNA was denatured and separated on a glyoxal agarose gel and urea-PAGE, respectively.
  • Equal volume of CM was treated with PBS, cyclodextrin, lysis buffer or phospholipase A2. The untreated and treated CM were extracted for RNA. The RNA was separated on urea-PAGE.
  • RNA from CM was treated with RNAse III and the treated RNA was separated in parallel with untreated RNA on a urea-PAGE. RNA in the gels was visualized by staining with ethidium bromide.
  • FIG. 20 Density of RNA in the CM. After fractionation of CM, CM pretreated with lysis buffer and RNA MW standards on a sucrose density gradient equilibrium centrifugation as described in FIG. 4 , each fraction was extracted for RNA. a) the relative RNA yield for each fraction in each sample was plotted against fraction number. The relative concentration was normalized to the highest RNA concentration in each gradient which was arbitrary set as 100%. b) The RNA extracted from each fraction was separated on a urea-PAGE.
  • FIG. 21 RNA was not in CD81+ exosomes.
  • CD81 immunoprecipitation which also precipitated CD9 was performed as described in FIG. 2 .
  • the immunoprecipitate and the supernatant were extracted for RNA and the extracts were separated on a urea-PAGE and visualized by ethidium bromide staining.
  • FIG. 22 Microarray analysis of miRNA in the CM.
  • RNA samples from MSC and the CM were hybridized to microarray chips containing probes for miRNA transcripts listed in Sanger miRBase Release 10.1. The hybridization was performed using two biological replicates of each RNA samples.
  • FIG. 23 HPLC fractionation of CM and NCM.
  • CM and NCM were fractionated on a HPLC using BioSep 54000, 7.8 mm ⁇ 30 cm column.
  • the components in CM or NCM were eluted with 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2.
  • the elution mode was isocratic and the run time was 40 minutes.
  • the eluent was monitored with an UV-visible detector set at 220 nm. The % area under each peak was integrated from the UV-visible detector.
  • the present invention is based on the demonstration that human ESC-derived mesenchymal stem cells (MSCs) mediate cardioprotective effects through secreted large complexes of ⁇ 50-100 nm in diameter. Such complexes or particles may therefore be used for therapeutic means, including for cardioprotection, in place of the cells themselves.
  • MSCs human ESC-derived mesenchymal stem cells
  • the Examples further demonstrate other properties of these particles or complexes.
  • proteins of such particles or complexes have MW-independent sedimentation densities of 1.016-1.215 g/ml that revert to MW-dependent densities upon treatment with a membrane lysis buffer.
  • the secretion also contains RNAs ( ⁇ 300 nts) in cholesterol-rich lipid vesicles.
  • HPLC fractionation and dynamic light scattering studies further indicate that the only detectable particles in the secretion within hydrodynamic radius (rh) range of 1-1000 nm had a rh of 45-55 nm.
  • mesenchymal stem cell particles, complexes or exosomes may be used for a variety of purposes, such as treatment or prevention for cardiac or heart diseases such as ischaemia, cardiac inflammation or heart failure. They may also be used for repair following perfusion injury.
  • MSC mesenchymal stem cell
  • the particle may be derivable from the MSC by any of several means, for example by secretion, budding or dispersal from the MSC.
  • the particle may be produced, exuded, emitted or shed from the MSC.
  • the particle may be secreted into the cell culture medium.
  • the particle may in particular comprise a vesicle.
  • the particle may comprise an exosome.
  • the particles described here may comprise any one or more of the properties of the exosomes described herein.
  • the particle may comprise vesicles or a flattened sphere limited by a lipid bilayer.
  • the particles may comprise diameters of 40-100 nm.
  • the particles may be formed by inward budding of the endosomal membrane.
  • the particles may have a density of ⁇ 1.13-1.19 g/ml and may float on sucrose gradients.
  • the particles may be enriched in cholesterol and sphingomyelin, and lipid raft markers such as GM1, GM3, flotillin and the src protein kinase Lyn.
  • the particles may comprise one or more proteins present in mesenchymal stem cells or mesenchymal stem cell conditioned medium (MSC-CM), such as a protein characteristic or specific to the MSC or MSC-CM. They may comprise RNA, for example miRNA.
  • the particle may comprise molecules secreted by the MSC.
  • Such a particle, and combinations of any of the molecules comprised therein, including in particular proteins or polypeptides, may be used to supplement the activity of, or in place of, the MSCs or medium conditioned by the MSCs for the purpose of for example treating or preventing a disease.
  • the particle may comprise a cytosolic protein found in cytoskeleton e.g. tubulin, actin and actin-binding proteins, intracellular membrane fusions and transport e.g. annexins and rab proteins, signal transduction proteins e.g. protein kinases, 14-3-3 and heterotrimeric G proteins, metabolic enzymes e.g. peroxidases, pyruvate and lipid kinases, and enolase-1 and the family of tetraspanins e.g. CD9, CD63, CD81 and CD82.
  • the particle may comprise one or more tetraspanins.
  • the particles may comprise mRNA and/or microRNA.
  • the term “particle” as used in this document may be taken to mean a discrete entity.
  • the particle may be something that is isolatable from a mesenchymal stem cell (MSC) or mesenchymal stem cell conditioned medium (MSC-CM).
  • the particle may be responsible for at least an activity of the MSC or MSC-CM.
  • the particle may be responsible for, and carry out, substantially most or all of the functions of the MSC or MSC-CM.
  • the particle may be a substitute (or biological substitute) for the MSC or MSC-CM.
  • the particle may be used for any of the therapeutic purposes that the MSC or MSC-CM may be put to use.
  • the particle preferably has at least one property of a mesenchymal stem cell.
  • the particle may have a biological property, such as a biological activity.
  • the particle may have any of the biological activities of an MSC.
  • the particle may for example have a therapeutic or restorative activity of an MSC.
  • media conditioned by MSCs comprise biological activities of MSC and are capable of substituting for the MSCs themselves.
  • the biological property or biological activity of an MSC may therefore correspond to a biological property or activity of an mesenchymal stem cell conditioned medium.
  • the particle may comprise one or more biological properties or activities of a mesenchymal stem cell conditioned medium (MSC-CM).
  • MSC-CM Mesenchymal Stem Cell Conditioned Medium
  • the conditioned cell culture medium such as a Mesenchymal Stem Cell Conditioned Medium (MSC-CM) may be obtained by culturing a mesenchymal stem cell (MSC), a descendent thereof or a cell line derived therefrom in a cell culture medium; and isolating the cell culture medium.
  • the mesenchymal stem cell may be produced by a process comprising obtaining a cell by dispersing a embryonic stem (ES) cell colony.
  • ES embryonic stem
  • the cell, or a descendent thereof may be propagated in the absence of co-culture in a serum free medium comprising FGF2.
  • the particle may be produced or isolated in a number of ways. Such a method may comprise isolating the particle from a mesenchymal stem cell (MSC). Such a method may comprise isolating the particle from an mesenchymal stem cell conditioned medium (MSC-CM).
  • MSC mesenchymal stem cell
  • MSC-CM mesenchymal stem cell conditioned medium
  • the particle may be isolated for example by being separated from non-associated components based on any property of the particle.
  • the particle may be isolated based on molecular weight, size, shape, composition or biological activity.
  • the conditioned medium may be filtered or concentrated or both during, prior to or subsequent to separation.
  • it may be filtered through a membrane, for example one with a size or molecular weight cut-off. It may be subject to tangential force filtration or ultrafiltration.
  • filtration with a membrane of a suitable molecular weight or size cutoff as described in the Assays for Molecular Weight elsewhere in this document, may be used.
  • the conditioned medium may be subject to further separation means, such as column chromatography.
  • column chromatography high performance liquid chromatography (HPLC) with various columns may be used.
  • HPLC high performance liquid chromatography
  • the columns may be size exclusion columns or binding columns.
  • One or more properties or biological activities of the particle may be used to track its activity during fractionation of the mesenchymal stem cell conditioned medium (MSC-CM).
  • MSC-CM mesenchymal stem cell conditioned medium
  • light scattering, refractive index, dynamic light scattering or UV-visible detectors may be used to follow the particles.
  • a therapeutic activity such as cardioprotective activity may be used to track the activity during fractionation.
  • a mesenchymal stem cell particle may be produced by culturing mesenchymal stem cells in a medium to condition it.
  • the mesenchymal stem cells may comprise HuES9.E1 cells.
  • the medium may comprise DMEM.
  • the DMEM may be such that it does not comprise phenol red.
  • the medium may be supplemented with insulin, transferrin, or selenoprotein (ITS), or any combination thereof.
  • It may comprise FGF2.
  • It may comprise PDGF AB.
  • the concentration of FGF2 may be about 5 ng/ml FGF2.
  • the concentration of PDGF AB may be about 5 ng/ml.
  • the medium may comprise glutamine-penicillin-streptomycin or b-mercaptoethanol, or any combination thereof.
  • the cells may be cultured for about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 days or more, for example 3 days.
  • the conditioned medium may be obtained by separating the cells from the medium.
  • the conditioned medium may be centrifuged, for example at 500 g. it may be concentrated by filtration through a membrane.
  • the membrane may comprise a >1000 kDa membrame.
  • the conditioned medium may be concentrated about 50 times or more.
  • the conditioned medium may be subject to liquid chromatography such as HPLC.
  • the conditioned medium may be separated by size exclusion. Any size exclusion matrix such as Sepharose may be used.
  • a TSK Guard column SWXL, 6 ⁇ 40 mm or a TSK gel G4000 SWXL, 7.8 ⁇ 300 mm may be employed.
  • the eluent buffer may comprise any physiological medium such as saline. It may comprise 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2.
  • the chromatography system may be equilibrated at a flow rate of 0.5 ml/min.
  • the elution mode may be isocratic. UV absorbance at 220 nm may be used to track the progress of elution. Fractions may be examined for dynamic light scattering (DLS) using a quasi-elastic light scattering (QELS) detector.
  • DLS dynamic light scattering
  • QELS quasi-elastic light scattering
  • Fractions which are found to exhibit dynamic light scattering may be retained. For example, a fraction which is produced by the general method as described above, and which elutes with a retention time of 11-13 minutes, such as 12 minutes, is found to exhibit dynamic light scattering. The r h of particles in this peak is about 45-55 nm. Such fractions comprise mesenchymal stem cell particles such as exosomes.
  • the property of a mesenchymal stem cell may comprise a property of a medium conditioned by a mesenchymal stem cell (MSC-CM). Methods of producing such a mesenchymal stem cell conditioned medium are described elsewhere in this document and are illustrated in for Example 1 below.
  • the property may comprise a biological property such as a biological activity.
  • biological activities include cardioprotection, reduction of oxidative stress and reduction of infarct size.
  • the particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising cardioprotection
  • the cardioprotection may comprise restoration or maintenance of cardiac function during ischemia and/or reperfusion.
  • Cardioprotection may for example be assayed using any one or more of the methods described in Examples 5, 10, 14 and 20.
  • the particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising the ability to reduce oxidative stress (or cytoprotection).
  • MSC-CM mesenchymal stem cell conditioned medium
  • the reduction of oxidative stress may for example be assayed using an in vitro assay of hydrogen peroxide (H 2 O 2 )-induced cell death.
  • hydrogen peroxide (H 2 O 2 )-mediated oxidative stress is induced in human leukemic CEM cells and cell viability is monitored by Trypan blue-exclusion.
  • Human leukemic CEM cells are incubated with particle, conditioned medium or mesenchymal stem cell (with saline as a control) and treated with 50 ⁇ M H 2 O 2 to induce oxidative stress.
  • Cell viability is assessed using Trypan Blue exclusion at 12, 24, 36 and 48 hours after H 2 O 2 treatment.
  • the reduction of oxidative stress may further be assayed using an in vivo assay of DNA oxidation.
  • In vivo oxidative stress may also be assayed as follows. Pigs are treated with the particle, conditioned medium or mesenchymal stem cell (with saline as a control). Tissue sections of pig heart are obtained. Nuclear oxidative stress in tissue sections of treated and untreated pigs is quantified by 8-OHdG immunostaining for oxidized DNA. The tissue sections are assayed for intense nuclear staining indicative of DNA oxidation and oxidative stress.
  • the particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising the ability to reduce infarct size.
  • MSC-CM mesenchymal stem cell conditioned medium
  • Infarct size may for example be assayed using any one or more of the methods described in Examples 6 and 13.
  • the particle may have a molecular weight of greater than 100 kDa. It may have a molecular weight of greater than 500 kDa. For example, it may have a molecular weight of greater than 1000 kDa.
  • the molecular weight may be determined by various means. In principle, the molecular weight may be determined by size fractionation and filtration through a membrane with the relevant molecular weight cut-off. The particle size may then be determined by tracking segregation of component proteins with SDS-PAGE or by a biological assay.
  • the particle may have a molecular weight of greater than 100 kDa.
  • the particle may be such that most proteins of the particle with less than 100 kDa molecular weight segregate into the greater than 100 kDa molecular weight retentate fraction, when subject to filtration.
  • most proteins of the particle with less than 500 kDa molecular weight may segregate into the greater than 500 kDa molecular weight retentate fraction. This indicates that the particle may have a molecular weight of more than 500 kDa.
  • the particle may have a molecular weight of more than 1000 kDa.
  • the particle may be such that when subject to filtration with a membrane with a molecular weight cutoff of 1000 kDa, the relevant biological activity substantially or predominantly remains in the retentate fraction.
  • biological activity may be absent in the filtrate fraction.
  • the biological activity may comprise any of the biological activities of the particle described elsewhere in this document.
  • the biological activity may comprise reduction of infarct size, as assayed in any suitable model of myocardia ischemia and reperfusion injury.
  • the biological activity may be assayed in a mouse or pig model, such as described in the Examples.
  • myocardial ischemia is induced by 30 minutes left coronary artery (LCA) occlusion by suture ligation and reperfusion is initiated by removal of suture.
  • Mice are treated with liquid containing the particles (such as unfractionated MSC-CM), filtrate (such as ⁇ 100 or 1,000 kD fraction), retentate (such as >1000 kD retentate) or saline intravenously via the tail vein, 5 minutes before reperfusion. 24 hours later, the hearts are excised. Before excision, the Area At Risk (AAR) is determined by religating the LCA and then perfusing Evans blue through the aorta.
  • AAR Area At Risk
  • AAR is defined as the area not stained by the dye and is expressed as a percentage of the left ventricular wall area. Infarct size is assessed 24 hours later using Evans blue and TTC. Where the relative infarct size is significantly reduced in animals treated with mesenchymal stem cell conditioned medium (MSC-CM) and the retentate (such as a >1000 kD) fraction when compared to saline, this indicates that the particle has a molecular weight which is higher than the relevant cutoff of the membrane (e.g., greater than 1000 kDa).
  • MSC-CM mesenchymal stem cell conditioned medium
  • retentate such as a >1000 kD
  • the particle may have a size of greater than 2 nm.
  • the particle may have a size of greater than 5 nm, 10 nm, 20 nm, 30 nm, 40 nm or 50 nm.
  • the particle may have a size of greater than 100 nm, such as greater than 150 nm.
  • the particle may have a size of substantially 200 nm or greater.
  • the particle or particles may have a range of sizes, such as between 2 nm to 20 nm, 2 nm to 50 nm, 2 nm to 100 nm, 2 nm to 150 nm or 2 nm to 200 nm.
  • the particle or particles may have a size between 20 nm to 50 nm, 20 nm to 100 nm, 20 nm to 150 nm or 20 nm to 200 nm.
  • the particle or particles may have a size between 50 nm to 100 ⁇ m, 50 ⁇ m to 150 nm or 50 nm to 200 nm.
  • the particle or particles may have a size between 100 nm to 150 nm or 100 nm to 200 nm.
  • the particle or particles may have a size between 150 nm to 200 nm.
  • the size may be determined by various means. In principle, the size may be determined by size fractionation and filtration through a membrane with the relevant size cut-off. The particle size may then be determined by tracking segregation of component proteins with SDS-PAGE or by a biological assay.
  • the size may also be determined by electron microscopy, as described in Example 21.
  • the size may comprise a hydrodynamic radius.
  • the hydrodynamic radius of the particle may be below 100 nm. It may be between about 30 nm and about 70 nm.
  • the hydrodynamic radius may be between about 40 nm and about 60 nm, such as between about 45 nm and about 55 nm.
  • the hydrodynamic radius may be about 50 nm.
  • the hydrodynamic radius of the particle may be determined by any suitable means, for example, laser diffraction or dynamic light scattering.
  • An example of a dynamic light scattering method to determine hydrodynamic radius is set out in Example 33 below.
  • the particle may comprise one or more proteins secreted by a mesenchymal stem cell.
  • the particle may comprise one or more proteins present in mesenchymal stem cell conditioned medium (MSC-CM).
  • the particle may comprise 10% or more, 20% or more, 30% or more, 40% or more, 50% or more, 60% or more or 70% or more of these proteins.
  • the particle may comprise substantially about 75% of these proteins.
  • the proteins may be defined by reference to a list of proteins or gene products of a list of genes.
  • the proteins may be selected from those set out in Table D1 below.
  • Table D1 comprises the following proteins numbered 1 to 250, as well as the “proteins with unidentified functions”, in the paragraphs below:
  • IPI00021428 Actin, alpha skeletal muscle; 2. IPI00414057 Actin alpha 1 skeletal muscle protein; 3. IPI00008603 Actin, aortic smooth muscle; 4. IPI00021439 Actin, cytoplasmic 1; 5. IPI00023006 Actin, alpha cardiac; 6. IPI00021440 Actin, cytoplasmic 2; 7. IPI00025416 Actin, gamma-enteric smooth muscle; 8. IPI00479925 agrin; 9. IPI00015102 CD166 antigen precursor; 10. IPI00007423 Acidic leucine-rich nuclear phosphoprotein 32 family member B; 11. IPI00413331 36 kDa protein; 12. IPI00412577 34 kDa protein; 13.
  • IPI00413506 33 kDa protein; 14. IPI00418169 Hypothetical protein DKFZp686P03159; 15. IPI00003815 Rho GDP-dissociation inhibitor 1; 16. IPI00004656 Beta-2-microglobulin precursor; 17. IPI00218042 Splice Isoform BMP1-5 of Bone morphogenetic protein 1 precursor; 18. IPI00009054 Splice Isoform BMP1-3 of Bone morphogenetic protein 1 precursor; 19. IPI00014021 Splice Isoform BMP1-1 of Bone morphogenetic protein 1 precursor; 20. IPI00218040 Splice Isoform BMP1-4 of Bone morphogenetic protein 1 precursor; 21.
  • IPI00290085 Neural-cadherin precursor 31. IPI00029739 Splice Isoform 1 of Complement factor H precursor; 32. IPI00012011 Cofilin, non-muscle isoform; 33. IPI00007257 calsyntenin 1 isoform 2; 34. IPI00218539 Splice Isoform B of Collagen alpha-1(XI) chain precursor; 35. IPI00477350 Collagen, type XI, alpha 1; 36. IPI00329573 Splice Isoform Long of Collagen alpha-1(XII) chain precursor; 37. IPI00221384 Splice Isoform Short of Collagen alpha-1(XII) chain precursor; 38.
  • IPI00400935 Collagen alpha-1(XVI) chain precursor; 39. IPI00297646 Collagen alpha-1(I) chain precursor; 40. IPI00164755 Prepro-alpha2(I) collagen precursor; 41. IPI00304962 Collagen alpha-2(I) chain precursor; 42. IPI00021033 Collagen alpha-1(III) chain precursor; 43. IPI00167087 COL3A1 protein; 44. IPI00021034 Collagen alpha-1(IV) chain precursor; 45. IPI00479324 alpha 2 type IV collagen preproprotein; 46. IPI00306322 Collagen alpha-2(IV) chain precursor; 47. IPI00303313 Collagen alpha-1(V) chain precursor; 48.
  • IPI00220701 Splice Isoform 2 of Collagen alpha-3(VI) chain precursor; 57. IPI00072917 alpha 3 type VI collagen isoform 3 precursor; 58. IPI00021828 Cystatin B; 59. IPI00007778 Di-N-acetylchitobiase precursor; 60. IPI00295741 Cathepsin B precursor;
  • Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG). Splice isoform 3; 81. IPI00339225 Splice Isoform 5 of Fibronectin precursor; 82. IPI00339319 Splice Isoform 11 of Fibronectin precursor; 83. IPI00556632 Splice Isoform 12 of Fibronectin precursor; 84. IPI00411462 Hypothetical protein DKFZp686B18150; 85. IPI00029723 Follistatin-related protein 1 precursor; 86. IPI00005401 Polypeptide N-acetylgalactosaminyltransferase 5; 87. IPI00219025 Glutaredoxin-1; 88. IPI00171411 Golgi phosphoprotein 2; 89. IPI00026314 Gelsolin precursor;
  • IPI100024284 Basement membrane-specific heparan sulfate proteoglycan core protein precursor; 98. IPI00297284 Insulin-like growth factor binding protein 2 precursor; 99. IPI00297284 Insulin-like growth factor binding protein 2 precursor; 100. IPI00029236 Insulin-like growth factor binding protein 5 precursor; 101. IPI00029236 Insulin-like growth factor binding protein 5 precursor; 102. IPI00029235 Insulin-like growth factor binding protein 6 precursor; 103. IPI00029235 Insulin-like growth factor binding protein 6 precursor; 104. IPI00016915 Insulin-like growth factor binding protein 7 precursor; 105. IPI00016915 Insulin-like growth factor binding protein 7 precursor; 106.
  • IPI00374397 PREDICTED similar to tropomyosin 4; 116. IPI00374732 PREDICTED: similar to PPIA protein; 117. IPI00402104 PREDICTED: similar to peptidylprolyl isomerase A isoform 1; cyclophilin A; peptidyl-pro; 118. IPI00455415 PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein C-like dJ845O24.4; 119. IPI00454722 PREDICTED: similar to Phosphatidylethanolamine-binding protein; 120. IPI00454852 PREDICTED: similar to Teratocarcinoma-derived growth factor 1;
  • IPI00002802 Protein-lysine 6-oxidase precursor; 122. IPI00410152 latent transforming growth factor beta binding protein 1 isoform LTBP-1L; 123. IPI00220249 Latent transforming growth factor beta-binding protein, isoform 1L precursor; 124. IPI00220249 Latent transforming growth factor beta-binding protein, isoform 1L precursor”; 125. IPI00410152 latent transforming growth factor beta binding protein 1 isoform LTBP-1 L; 126. IPI00020986 Lumican precursor; 127. IPI00291006 Malate dehydrogenase, mitochondrial precursor; 128. IPI00005707 Macrophage mannose receptor 2 precursor; 129.
  • IPI00472718 peptidylprolyl isomerase A isoform 2; 152. IPI00000874 Peroxiredoxin-1; 153. IPI00024915 Peroxiredoxin-5, mitochondrial precursor; 154. IPI00375306 peroxiredoxin 5 precursor, isoform b; 155. IPI00012503 Splice Isoform Sap-mu-0 of Proactivator polypeptide precursor; 156. IPI00374179 proteasome activator subunit 1 isoform 2; 157. IPI00030154 Proteasome activator complex subunit 1; 158. IPI00168812 PTK7 protein tyrosine kinase 7 isoform d precursor; 159.
  • IPI00419941 PTK7 protein tyrosine kinase 7 isoform a precursor; 160. IPI00003590 Quiescin Q6, isoform a; 161. IPI00015916 Bone-derived growth factor (Fragment); 162. IPI00015916 Bone-derived growth factor; 163. IPI00298289 Splice Isoform 2 of Reticulon-4; 164. IPI00021766 Splice Isoform 1 of Reticulon-4; 165. IPI00013895 Calgizzarin; 166. IPI00010402 Hypothetical protein; 167. IPI00218733 Superoxide dismutase; 168. IPI00014572 SPARC precursor; 169.
  • IPI00005614 Splice Isoform Long of Spectrin beta chain, brain 1; 170. IPI00008780 Stanniocalcin-2 precursor; 171. IPI00301288 SEL-OB protein; 172. IPI00216138 Transgelin; 173. IPI00018219 Transforming growth factor-beta-induced protein ig-h3 precursor; 174. IPI00304865 transforming growth factor, beta receptor III”; 175. IPI00296099 Thrombospondin-1 precursor; 176. IPI00032292 Metalloproteinase inhibitor 1 precursor; 177. IPI00027166 Metalloproteinase inhibitor 2 precursor; 178. IPI00220828 Thymosin beta-4; 179. IPI00180240 thymosin-like 3;
  • IPI00552815 Collagen, type V, alpha 1; 207. IPI00552981CDNA PSEC0266 fis, clone NT2RP3003649, highly similar to Homo sapiens fibulin-1D mRNA; 208. IPI00180776 29 kDa protein; 209. IPI00552416 Filamin A, alpha;
  • IPI00640698 Actin, gamma-enteric smooth muscle; 211. IPI00514530 Actin, alpha 1, skeletal muscle; 212. IPI00556442 Insulin-like growth factor binding protein 2 variant (Fragment); 213. IPI00513782 Gelsolin; 214. IPI00478731 29 kDa protein; 215. IPI00396479 24 kDa protein; 216. IPI00334627 39 kDa protein; 217. IPI00555762 PTK7 protein tyrosine kinase 7 isoform a variant (Fragment); 218. IPI00658202 97 kDa protein; 219. IPI00006273 CYR61 protein; 220.
  • IPI00414489 Protein 231.
  • IPI00411463 Protein 232.
  • IPI00556415 Transgelin variant (Fragment);
  • IPI00718825 Calmodulin;
  • IPI00478156 17 kDa protein 235.
  • IPI00386621 CALM3 protein;
  • IPI00647001 Acidic 237.
  • IPI00642650 Similar to Stanniocalcin 2 precursor;
  • IPI00641471 Collagen-like protein; 239.
  • IPI00514669 SH3 domain binding glutamic acid-rich protein like 3; 240.
  • IPI00719422 Triosephosphate isomerase 241.
  • IPI00003734 Putative S100 calcium-binding protein H_NH0456N16.1; 242. IPI00029574 11 kDa protein; 243. IPI00641047 Gelsolin; 244. IPI00647556 Gelsolin; 245. IPI00654821 hypothetical protein LOC54845 isoform 1; 246. IPI00647572 Dickkopf related protein-3 precursor; 247. IPI00639879 Similar to Cytokinesis protein sepA; 248. IPI00657746 Similar to Dedicator of cytokinesis protein 8; 249. IPI00555993 Vascular endothelial growth factor receptor 3 variant; 250. IPI00552545 Dedicator of cytokinesis protein 8.
  • the proteins may be selected from the gene products of the genes set out in Table D2 below.
  • Table D2 comprises the following genes in the paragraphs below:
  • the particle may additionally, or alternatively, comprise any of the gene products of the 201 genes listed below in Table D3. These genes are characterised according to a biological process the gene is involved in.
  • the particle may be employed to affect, control or regulate any of these 58 biological processes.
  • the particle may additionally, or alternatively, comprise any of the gene products of the 201 genes listed below in Table D4. These genes are characterised according to a pathway the gene is involved in.
  • the particle may be employed to affect, control or regulate any of these 30 pathways.
  • the particle may additionally, or alternatively, comprise any of the gene products of the 593 genes and/or 794 gene products listed below in Table D5.
  • the particle may be employed to affect, control or regulate any of the biological processes or pathways the genes or gene products are involved in.
  • the particle may in particular comprise a vesicle.
  • the particle may comprise an exosome.
  • the Examples describe the isolation of the active component in the secretion that confers cardioprotection against the reperfusion injury.
  • the active component may comprise an exosome secreted by the mesenchymal stem cells (MSCs).
  • Exosomes are small membrane vesicles formed in late endocytic compartments (multivesicular bodies) first described to be secreted by reticulocytes in 1983 21 and subsequently found to be secreted by many cells types including various haematopoietic cells, tumours of haematopoietic or non-haematopoietic origin and epithelial cells 22 . They are distinct entities from the more recently described ‘ribonuclease complex’ also named exosome 23 .
  • Exosomes may be defined by morphological and biochemical parameters (see reviews 22,24-35 ). Accordingly, the particles described here may comprise one or more of these morphological or biochemical parameters.
  • Exosomes are classically defined as “saucer-like” vesicles or a flattened sphere limited by a lipid bilayer with diameters of 40-100 nm and are formed by inward budding of the endosomal membrane. Like all lipid vesicles and unlike protein aggregates or nucleosomal fragments that are released by apoptotic cells, exosomes have a density of ⁇ 1.13-1.19 g/ml and float on sucrose gradients. Exosomes are enriched in cholesterol and sphingomyelin, and lipid raft markers such as GM1, GM3, flotillin and the src protein kinase Lyn suggesting that their membranes are enriched in lipid rafts.
  • exosomes contain ubiquitous proteins that appear to be common to all exosomes and proteins that are cell-type specific. Also, proteins in exosomes from the same cell-type but of different species are highly conserved.
  • the ubiquitous exosome-associated proteins include cytosolic proteins found in cytoskeleton e.g. tubulin, actin and actin-binding proteins, intracellular membrane fusions and transport e.g. annexins and rab proteins, signal transduction proteins e.g. protein kinases, 14-3-3 and heterotrimeric G proteins, metabolic enzymes e.g.
  • tetraspanins e.g. CD9, CD63, CD81 and CD82.
  • the tetraspannins are highly enriched in exosomes and are known to be involved in the organization of large molecular complexes and membrane subdomains.
  • exosomes examples include MHC class II molecules in exosomes from MHC class II-expressing cells, CD86 in dendritic cell-derived exosomes, T-cell receptors on T-cell-derived exosomes etc.
  • exosomes do not contain proteins of nuclear, mitochondrial, endoplasmic-reticulum or Golgi-apparatus origin.
  • highly abundant plasma membrane proteins are absent in exosomes suggesting that they are not simply fragments of the plasma membrane.
  • Many of the reported ubiquitous exosome-associated proteins are also present in the proteomic profile of the hESC-MSC secretion.
  • Exosomes are also known to contain mRNA and microRNA, which can be delivered to another cell, and can be functional in this new location 36 .
  • the physiological functions of exosome remain poorly defined. It is thought to help eradicate obsolete proteins, recycle proteins, mediate tramission of infectious particles such as prions and viruses, induce complement resistance, facilitate immune cell-cell communication and transmit cell signaling 1,22,25-28,37-40 .
  • Exosomes have been used in immunotherapy for treatment of cancer 34
  • the particle may be used as a substitute for an MSC or MSC-CM, as described above
  • the particle may be used for any of the therapeutic purposes that MSCs or MSC-CMs are currently being used, or in the future may be used.
  • Mesenchymal stem cells and differentiated cells produced by the methods and compositions described here may be used for, or for the preparation of a pharmaceutical composition for, the treatment of a disease.
  • a disease may comprise a disease treatable by regenerative therapy, including cardiac failure, bone marrow disease, skin disease, burns, degenerative disease such as diabetes, Alzheimer's disease, Parkinson's disease, etc and cancer. Accordingly, particles from MSCs may be used to treat such diseases.
  • Particles from mesenchymal stem cells such as those made according to the methods and compositions described here may be used for a variety of commercially important research, diagnostic, and therapeutic purposes.
  • the particles from mesenchymal stem cells may in particular be used for the preparation of a pharmaceutical composition for the treatment of disease.
  • disease may comprise a disease treatable by regenerative therapy, including cardiac failure, bone marrow disease, skin disease, burns, degenerative disease such as diabetes, Alzheimer's disease, Parkinson's disease, etc and cancer.
  • BM-MSCs bone marrow derived mesenchymal stem cells
  • the particles from MSCs described here may be used to treat diseases which these functions may have a role in, or whose repair or treatment involves any one or more of these biological processes.
  • the proteins expressed by the MSCs singly or in combination, preferably in the form of particles as described here, may be used to supplement the activity of, or in place of, the MSCs, or media conditioned by the MSCs, for the purpose of for example treating or preventing such diseases.
  • the 201 gene products expressed by the MSCs are shown to activate important signalling pathways in cardiovascular biology, bone development and hematopoiesis such as Jak-STAT, MAPK, Toll-like receptor, TGF-beta signalling and mTOR signaling pathways. Accordingly, the particles from the MSCs, etc, may be used to prevent or treat a disease in which any of these signalling pathways is involved, or whose etiology involves one or more defects in any one or more of these signalling pathways.
  • such particles may be used to treat cardiac failure, bone marrow disease, skin disease, burns and degenerative diseases such as diabetes, Alzheimer's disease, Parkinson's disease and cancer.
  • Such particles may also be used to treat myocardial infarction, a cutaneous wound, a dermatologic disorder, a dermatological lesion, dermatitis, psoriasis, condyloma, verruca, hemangioma, keloid, skin cancer, atopic dermatitis, Behcet disease, chronic granulomatous disease, cutaneous T cell lymphoma, ulceration, a pathological condition characterised by initial injury inducing inflammation and immune dysregulation leading to chronic tissue remodeling including fibrosis and loss of function, renal ischemic injury, cystic fibrosis, sinusitis and rhinitis or an orthopedic disease.
  • the particles may be used to aid wound healing, scar reduction, bone formation, a bone graft or bone marrow transplantation in an individual.
  • conditioned medium should be taken to include not only cell culture medium exposed to MSCs as well as such a composition comprising one or more, preferably substantially all, the polypeptides which are present in the conditioned medium.
  • the particles may also be used as sources for any of the proteins secreted or expressed by the MSCs.
  • the mesenchymal stem cell particle methods and compositions described here may be used for treatment or prevention of heart disease.
  • Heart disease is an umbrella term for a variety for different diseases affecting the heart. As of 2007, it is the leading cause of death in the United States, England, Canada and Wales, killing one person every 34 seconds in the United States alone. Heart disease includes any of the following.
  • Coronary artery disease is a disease of the artery caused by the accumulation of atheromatous plaques within the walls of the arteries that supply the myocardium.
  • Angina pectoris chest pain
  • myocardial infarction myocardial infarction
  • Cardiomyopathy is the deterioration of the function of the myocardium (i.e., the actual heart muscle) for any reason. People with cardiomyopathy are often at risk of arrhythmia and/or sudden cardiac death. Extrinsic cardiomyopathies—cardiomyopathies where the primary pathology is outside the myocardium itself comprise the majority of cardiomyopathies. By far the most common cause of a cardiomyopathy is ischemia.
  • the World Health Organization includes as specific cardiomyopathies: Alcoholic cardiomyopathy, coronary artery disease, congenital heart disease, nutritional diseases affecting the heart, ischemic (or ischaemic) cardiomyopathy, hypertensive cardiomyopathy, valvular cardiomyopathy, inflammatory cardiomyopathy.
  • Intrinsic cardiomyopathies weakness in the muscle of the heart that is not due to an identifiable external cause
  • DCM Dilated cardiomyopathy
  • HCM Hypertrophic cardiomyopathy
  • ARVC Arrhythmogenic right ventricular cardiomyopathy
  • RCM Restrictive cardiomyopathy
  • Noncompaction Cardiomyopathy the left ventricle wall has failed to properly grow from birth and such has a spongy appearance when viewed during an echocardiogram.
  • Cardiovascular disease is any of a number of specific diseases that affect the heart itself and/or the blood vessel system, especially the veins and arteries leading to and from the heart. Research on disease dimorphism suggests that women who suffer with cardiovascular disease usually suffer from forms that affect the blood vessels while men usually suffer from forms that affect the heart muscle itself. Known or associated causes of cardiovascular disease include diabetes mellitus, hypertension, hyperhomocysteinemia and hypercholesterolemia.
  • Types of cardiovascular disease include atherosclerosis
  • Ischaemic heart disease is disease of the heart itself, characterized by reduced blood supply to the organs. This occurs when the arteries that supply the oxygen and the nutrients gets stopped and the heart will not get enough of the oxygen and the nutrients and will eventually stop beating.
  • Heart failure also called congestive heart failure (or CHF), and congestive cardiac failure (CCF) is a condition that can result from any structural or functional cardiac disorder that impairs the ability of the heart to fill with or pump a sufficient amount of blood throughout the body.
  • Cor pulmonale is a failure of the right side of the heart.
  • Hypertensive heart disease is heart disease caused by high blood pressure, especially localised high blood pressure. Conditions that can be caused by hypertensive heart disease include: left ventricular hypertrophy, coronary heart disease, (Congestive) heart failure, hypertensive cardiomyopathy, cardiac arrhythmias, inflammatory heart disease, etc.
  • Inflammatory heart disease involves inflammation of the heart muscle and/or the tissue surrounding it.
  • Endocarditis comprises inflammation of the inner layer of the heart, the endocardium. The most common structures involved are the heart valves. Inflammatory cardiomegaly.
  • Myocarditis comprises inflammation of the myocardium, the muscular part of the heart.
  • Valvular heart disease is disease process that affects one or more valves of the heart.
  • the valves in the right side of the heart are the tricuspid valve and the pulmonic valve.
  • the valves in the left side of the heart are the mitral valve and the aortic valve. Included are aortic valve stenosis, mitral valve prolapse and valvular cardiomyopathy.
  • the particles as described in this document may be delivered to the human or animal body by any suitable means.
  • the delivery system may comprise a source of particles, such as a container containing the particles.
  • the delivery system may comprise a dispenser for dispensing the particles to a target.
  • a delivery system for delivering a particles comprising a source of particles as described in this document together with a dispenser operable to deliver the particles to a target.
  • Delivery systems for delivering fluid into the body include injection, surgical drips, catheters (including perfusion catheters) such as those described in U.S. Pat. No. 6,139,524, for example, drug delivery catheters such as those described in U.S. Pat. No. 7,122,019.
  • Delivery to the lungs or nasal passages may be achieved using for example a nasal spray, puffer, inhaler, etc as known in the art (for example as shown in U.S. Design Pat. D544,957.
  • Delivery to the kidneys may be achieved using an intra-aortic renal delivery catheter, such as that described in U.S. Pat. No. 7,241,273.
  • the particles may for example be used for the treatment or prevention of atherosclerosis.
  • perfusion of particles may be done intravenously to stabilize atherosclerotic plaques or reduce inflammation in the plaques.
  • the particles may be used for the treatment or prevention of septic shock by intravenous perfusion.
  • the particles may be used for the treatment or prevention of heart failure. This may be achieved by chronic intracoronary or intramyocardially perfusion of particles to retard remodeling or retard heart failure.
  • the particles may be used for the treatment or prevention of lung inflammation by intranasal delivery.
  • the particles may be used for the treatment or prevention of dermatological conditions e.g. psoriasis. Long term delivery of particles may be employed using transdermal microinjection needles until the condition is resolved.
  • the particles may be delivered for example to the cardiac tissue (i.e., myocardium, pericardium, or endocardium) by direct intracoronary injection through the chest wall or using standard percutaneous catheter based methods under fluoroscopic guidance for direct injection into tissue such as the myocardium or infusion of an inhibitor from a stent or catheter which is inserted into a bodily lumen.
  • cardiac tissue i.e., myocardium, pericardium, or endocardium
  • the particles may be delivered for example to the cardiac tissue (i.e., myocardium, pericardium, or endocardium) by direct intracoronary injection through the chest wall or using standard percutaneous catheter based methods under fluoroscopic guidance for direct injection into tissue such as the myocardium or infusion of an inhibitor from a stent or catheter which is inserted into a bodily lumen.
  • any variety of coronary catheter, or a perfusion catheter, may be used to administer the compound.
  • the particles may be coated or impregnated on a stent that is placed in a coronary vessel.
  • Mesenchymal stem cells and differentiated cells made according to the methods and compositions described here, and particles derived therefrom, may also be used for tissue reconstitution or regeneration in a human patient in need thereof.
  • the cells are administered in a manner that permits them to graft to the intended tissue site and reconstitute or regenerate the functionally deficient area.
  • the methods and compositions described here may be used to modulate the differentiation of stem cells.
  • Mesenchymal stem cells and differentiated cells and particles derived therefrom may be used for tissue engineering, such as for the growing of skin grafts.
  • Modulation of stem cell differentiation may be used for the bioengineering of artificial organs or tissues, or for prosthetics, such as stents.
  • Mesenchymal stem cells and differentiated cells made by the methods and compositions described here and particles derived therefrom may be used for the treatment of cancer.
  • cancer and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth.
  • Examples of cancer include but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia.
  • cancers include squamous cell cancer, small-cell lung cancer, non-small cell lung cancer, gastric cancer, pancreatic cancer, glial cell tumors such as glioblastoma and neurofibromatosis, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial carcinoma, salivary gland carcinoma, kidney cancer, renal cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer.
  • glial cell tumors such as glioblastoma and neurofibromatosis
  • cervical cancer ovarian cancer
  • liver cancer bladder cancer
  • hepatoma hepatoma
  • breast cancer colon cancer
  • colorectal cancer endometrial carcinoma
  • salivary gland carcinoma salivary gland carcinoma
  • kidney cancer renal cancer
  • prostate cancer prostate cancer
  • vulval cancer thyroid cancer
  • hepatic carcinoma various types of head and neck cancer.
  • solid tumor cancer including colon cancer, breast cancer, lung cancer and prostrate cancer
  • hematopoietic malignancies including leukemias and lymphomas
  • Hodgkin's disease aplastic anemia
  • skin cancer and familiar adenomatous polyposis.
  • Further examples include brain neoplasms, colorectal neoplasms, breast neoplasms, cervix neoplasms, eye neoplasms, liver neoplasms, lung neoplasms, pancreatic neoplasms, ovarian neoplasms, prostatic neoplasms, skin neoplasms, testicular neoplasms, neoplasms, bone neoplasms, trophoblastic neoplasms, fallopian tube neoplasms, rectal neoplasms, colonic neoplasms, kidney neoplasms, stomach neoplasms, and parathyroid neoplasms.
  • Breast cancer, prostate cancer, pancreatic cancer, colorectal cancer, lung cancer, malignant melanoma, leukaemia, lympyhoma, ovarian cancer, cervical cancer and biliary tract carcinoma are also included
  • the mesenchymal stem cells and differentiated cells made according to the methods and compositions described here may also be used in combination with anticancer agents such as endostatin and angiostatin or cytotoxic agents or chemotherapeutic agent.
  • anticancer agents such as endostatin and angiostatin or cytotoxic agents or chemotherapeutic agent.
  • drugs such as such as adriamycin, daunomycin, cis-platinum, etoposide, taxol, taxotere and alkaloids, such as vincristine, and antimetabolites such as methotrexate.
  • cytotoxic agent refers to a substance that inhibits or prevents the function of cells and/or causes destruction of cells.
  • the term is intended to include radioactive isotopes (e.g. I, Y, Pr), chemotherapeutic agents, and toxins such as enzymatically active toxins of bacterial, fungal, plant or animal origin, or fragments thereof.
  • the term includes oncogene product/tyrosine kinase inhibitors, such as the bicyclic ansamycins disclosed in WO 94/22867; 1,2-bis(arylamino) benzoic acid derivatives disclosed in EP 600832; 6,7-diamino-phthalazin-1-one derivatives disclosed in EP 600831; 4,5-bis(arylamino)-phthalimide derivatives as disclosed in EP 516598; or peptides which inhibit binding of a tyrosine kinase to a SH2-containing substrate protein (see WO 94/07913, for example).
  • a “chemotherapeutic agent” is a chemical compound useful in the treatment of cancer.
  • chemotherapeutic agents include Adriamycin, Doxorubicin, 5-Fluorouracil (5-FU), Cytosine arabinoside (Ara-C), Cyclophosphamide, Thiotepa, Busulfan, Cytoxin, Taxol, Methotrexate, Cisplatin, Melphalan, Vinblastine, Bleomycin, Etoposide, Ifosfamide, Mitomycin C, Mitoxantrone, Vincristine, VP-16, Vinorelbine, Carboplatin, Teniposide, Daunomycin, Caminomycin, Aminopterin, Dactinomycin, Mitomycins, Nicotinamide, Esperamicins (see U.S. Pat.
  • the particles described here may be isolated or produced from mesenchymal stem cell conditioned medium (MSC-CM).
  • MSCs suitable for use in the production of conditioned media and particles may be made by any method known in the art.
  • MSCs may be made by propagating a cell obtained by dispersing a embryonic stem (ES) cell colony, or a descendent thereof, in the absence of co-culture in a serum free medium comprising FGF2. This is described in detail in the sections below.
  • ES embryonic stem
  • MSC mesenchymal stem cells
  • MSC-like cells from hESCs
  • hTERT human telomerase reverse transcriptase
  • the particles may therefore be made from MSCs derived by the use of a clinically relevant and reproducible protocol for isolating similar or identical (such as homogenous) MSC populations from differentiating hESCs.
  • the method comprises dispersing a embryonic stem (ES) cell colony into cells. The cells are then plated out and propagated. The cells are propagated in the absence of co-culture in a serum free medium comprising fibroblast growth factor 2 (FGF2), in order to obtain mesenchymal stem cells (MSCs).
  • FGF2 fibroblast growth factor 2
  • the protocol does not require serum, use of mouse cells or genetic manipulations and requires less manipulations and time, and is therefore highly scalable.
  • the protocol may be used for the isolation of MSCs from two different hESC lines, HuES9 and H-1 and also a third one, Hes-3.
  • Human ES cell derived MSCs (hESC-MSCs) obtained by the methods and compositions described here are remarkably similar to bone-marrow derived MSCs (BM-MSCs).
  • the embryonic stem cell culture may comprise a human embryonic stem cell (hESC) culture.
  • hESC human embryonic stem cell
  • a method of generating mesenchymal stem cells comprises trypsinizing and propagating hESCs without feeder support in media supplemented with FGF2 and optionally PDGF AB before sorting for CD105+CD24-cells.
  • the method may comprise sorting for CD105+, CD24 ⁇ cells from trypsinized hESCs one week after feeder-free propagation in a media supplemented with FGF2 and optionally PDGF AB will generate to generate a hESC-MSC cell culture in which at least some, such as substantially all, or all cells are similar or identical (such as homogenous) to each other.
  • the MSCs produced by this method may be used to produce mesenchymal stem cell conditioned medium (MSC-CM), from which the particles may be isolated.
  • MSC-CM mesenchymal stem cell conditioned medium
  • One method of producing mesenchymal stem cells may comprise dispersing or disaggregating an embryonic stem cell colony into cells.
  • the embryonic stem cell colony may comprise a huES9 colony (Cowan C A, Klimanskaya I, McMahon J, Atienza J, Witmyer J, et al. (2004) Derivation of embryonic stem - cell lines from human blastocysts . N Engl J Med 350: 1353-1356) or a H1 ESC colony (Thomson J A, Itskovitz-Eldor J, Shapiro S S, Waknitz M A, Swiergiel J J, et al. (1998) Embryonic Stem Cell Lines Derived from Human Blastocysts . Science 282: 1145-1147).
  • the cells in the colony may be disaggregated or dispersed to a substantial extent, i.e., at least into clumps.
  • the colony may be disaggregated or dispersed to the extent that all the cells in the colony are single, i.e., the colony is completely disaggregated.
  • the disaggregation may be achieved with a dispersing agent.
  • the dispersing agent may be anything that is capable of detaching at least some embryonic stem cells in a colony from each other.
  • the dispersing agent may comprise a reagent which disrupts the adhesion between cells in a colony, or between cells and a substrate, or both.
  • the dispersing agent may comprise a protease.
  • the dispersing agent may comprise trypsin.
  • the treatment with trypsin may last for example for 3 minutes or thereabouts at 37 degrees C.
  • the cells may then be neutralised, centrifuged and resuspended in medium before plating out.
  • the method may comprise dispersing a confluent plate of human embryonic stem cells with trypsin and plating the cells out.
  • the disaggregation may comprise at least some of the following sequence of steps: aspiration, rinsing, trypsinization, incubation, dislodging, quenching, re-seeding and aliquoting.
  • aspiration rinsing
  • trypsinization trypsinization
  • incubation dislodging
  • quenching quenching
  • re-seeding aliquoting.
  • the following protocol is adapted from the Hedrick Lab, UC San Diego (http://hedricklab.ucsd.edu/Protocol/COSCell.html).
  • the media is aspirated or generally removed from the vessel, such as a flask.
  • the cells are rinsed with a volume, for example 5-10 mls, of a buffered medium, which is may be free from Ca 2+ and Mg 2+ .
  • the cells may be rinsed with calcium and magnesium free PBS.
  • an amount of dispersing agent in buffer is added to the vessel, and the vessel rolled to coat the growing surface with the dispersing agent solution. For example, 1 ml of trypsin in Hank's BSS may be added to a flask.
  • the cells are left for some time at a maintained temperature.
  • the cells may be left at 37° C. for a few minutes (e.g., 2 to 5 minutes).
  • the cells may be dislodged by mechanical action, for example by scraping or by whacking the side of the vessel with a hand. The cells should come off in sheets and slide down the surface.
  • a volume of medium is added to the flask.
  • the medium may comprise a neutralising agent to stop the action of the dispersing agent.
  • the dispersing agent is a protease such as trypsin
  • the medium may contain a protein, such as a serum protein, which will mop up the activity of the protease.
  • 3 ml of serum containing cell culture medium is added to the flask to make up a total of 4 mls.
  • the cells may be pipetted to dislodge or disperse the cells.
  • the cells are re-seeded into fresh culture vessels and fresh medium added.
  • a number of re-seedings may be made at different split ratios.
  • the cells may be reseeded at 1/15 dilution and 1/5 dilution.
  • the cells may be re-seeded by adding 1 drop of cells into a 25 cm 2 flask and 3 drops into another to re-seed the culture, and 7-8 mls media is then added to each to provide for 1/15 dilution and 1/5 dilution from for example a 75 cm 2 flask.
  • the cells may be aliquoted into new dishes or whatever split ratio is desired, and media added.
  • the method includes the following steps: human ES cells are first grown suspended in non-adherent manner to form embryoid bodies (EBs). 5-10 day old EBs are then trypsinized before plating as adherent cells on gelatine coated tissue culture plates.
  • EBs embryoid bodies
  • the disaggregated cells may be plated and maintained as a cell culture.
  • the cells may be plated onto a culture vessel or substrate such as a gelatinized plate.
  • a culture vessel or substrate such as a gelatinized plate.
  • the cells are grown and propagated without the presence of co-culture, e.g., in the absence of feeder cells.
  • the cells in the cell culture may be grown in a serum-free medium which is supplemented by one or more growth factors such as fibroblast growth factor 2 (FGF2) and optionally platelet-derived growth factor AB (PDGF AB), at for example 5 ng/ml.
  • FGF2 fibroblast growth factor 2
  • PDGF AB platelet-derived growth factor AB
  • the cells in the cell culture may be split or subcultured 1:4 when confluent, by treatment with trypsin, washing and replating.
  • the cells may be cultured in the absence of co-culture.
  • co-culture refers to a mixture of two or more different kinds of cells that are grown together, for example, stromal feeder cells.
  • the inner surface of the culture dish is usually coated with a feeder layer of mouse embryonic skin cells that have been treated so they will not divide.
  • the feeder layer provides an adherent surface to enable the ES cells to attach and grow.
  • the feeder cells release nutrients into the culture medium which are required for ES cell growth.
  • the ES and MSC cells may be cultured in the absence of such co-culture.
  • the cells may be cultured as a monolayer or in the absence of feeder cells.
  • the embryonic stem cells may be cultured in the absence of feeder cells to establish mesenchymal stem cells (MSC).
  • the dissociated or disaggregated embryonic stem cells may be plated directly onto a culture substrate.
  • the culture substrate may comprise a tissue culture vessel, such as a Petri dish.
  • the vessel may be pre-treated.
  • the cells may be plated onto, and grow on, a gelatinised tissue culture plate.
  • An example protocol for the gelatin coating of dishes follows. A solution of 0.1% gelatin in distilled water is made and autoclaved. This may be stored at room temp. The bottom of a tissue culture dish is covered with the gelatin solution and incubated for 5-15 min. Remove gelatin and plates are ready to use. Medium should be added before adding cells to prevent hypotonic lysis.
  • the dissociated or disaggregated embryonic stem cells may be cultured in a medium which may comprise a serum-free medium.
  • serum-free media may comprise cell culture media which is free of serum proteins, e.g., fetal calf serum.
  • Serum-free media are known in the art, and are described for example in U.S. Pat. Nos. 5,631,159 and 5,661,034. Serum-free media are commercially available from, for example, Gibco-BRL (Invitrogen).
  • the serum-free media may be protein free, in that it may lack proteins, hydrolysates, and components of unknown composition.
  • the serum-free media may comprise chemically-defined media in which all components have a known chemical structure. Chemically-defined serum-free media is advantageous as it provides a completely defined system which eliminates variability allows for improved reproducibility and more consistent performance, and decreases possibility of contamination by adventitious agents.
  • the serum-free media may comprise Knockout DMEM media (Invitrogen-Gibco, Grand Island, N.Y.).
  • the serum-free media may be supplemented with one or more components, such as serum replacement media, at a concentration of for example, 5%, 10%, 15%, etc.
  • the serum-free media may comprise or be supplemented with 10% serum replacement media from Invitrogen—Gibco (Grand Island, N.Y.).
  • the serum-free medium in which the dissociated or disaggregated embryonic stem cells are cultured may comprise one or more growth factors.
  • growth factors include PDGF, EGF, TGF-a, FGF, NGF, Erythropoietin, TGF-b, IGF-I and IGF-II.
  • the growth factor may comprise fibroblast growth factor 2 (FGF2).
  • the medium may also contain other growth factors such as platelet-derived growth factor AB (PDGF AB). Both of these growth factors are known in the art.
  • the method may comprise culturing cells in a medium comprising both FGF2 and PDGF AB.
  • the medium may comprise or further comprise epidermal growth factor (EGF).
  • EGF epidermal growth factor
  • Use of EGF may enhance growth of MSCs.
  • EGF may be used at any suitable concentration, for example 5-10 ng/ml EGF.
  • EGF may be used in place of PDGF.
  • EGF is a protein well known in the art, and is referred to as symbol EGF, Alt. Symbols URG, Entrez 1950, HUGO 3229, OMIM 131530, RefSeq NM — 001963, UniProt P01133.
  • FGF2 is a wide-spectrum mitogenic, angiogenic, and neurotrophic factor that is expressed at low levels in many tissues and cell types and reaches high concentrations in brain and pituitary. FGF2 has been implicated in a multitude of physiologic and pathologic processes, including limb development, angiogenesis, wound healing, and tumor growth. FGF2 may be obtained commercially, for example from Invitrogen-Gibco (Grand Island, N.Y.).
  • Platelet Derived Growth Factor is a potent mitogen for a wide range of cell types including fibroblasts, smooth muscle and connective tissue.
  • PDGF which is composed of a dimer of two chains termed the A chain and B chain, can be present as AA or BB homodimers or as an AB heterodimer.
  • Human PDGF-AB is a 25.5 kDa homodimer protein consisting of 13.3 kDa A chain and 12.2 B chain.
  • PDGF AB may be obtained commercially, for example from Peprotech (Rocky Hill, N.J.).
  • the growth factor(s), such as FGF2 and optionally PDGF AB, may be present in the medium at concentrations of about 100 pg/ml, such as about 500 pg/ml, such as about 1 ng/ml, such as about 2 ng/ml, such as about 3 ng/ml, such as about 4 ng/ml, such as about 5 ng/ml.
  • the medium contains FGF2 at about 5 ng/ml.
  • the medium may also contain PDGF AB, such as at about 5 ng/ml.
  • Cells in culture will generally continue growing until confluence, when contact inhibition causes cessation of cell division and growth. Such cells may then be dissociated from the substrate or flask, and “split”, subcultured or passaged, by dilution into tissue culture medium and replating.
  • the methods and compositions described here may therefore comprise passaging, or splitting during culture.
  • the cells in the cell culture may be split at a ratio of 1:2 or more, such as 1:3, such as 1:4, 1:5 or more.
  • the term “passage” designates the process consisting in taking an aliquot of a confluent culture of a cell line, in inoculating into fresh medium, and in culturing the line until confluence or saturation is obtained.
  • the method may further comprise a selection or sorting step, to further isolate or select for mesenchymal stem cells.
  • the selection or sorting step may comprise selecting mesenchymal stem cells (MSC) from the cell culture by means of one or more surface antigen markers.
  • MSC mesenchymal stem cells
  • the use of a selection or sorting step further enhances the stringency of sorting and selection specificity for MSCs and furthermore potentially reduces possible contamination from embryonic stem cells such as hESCs and other hESC-derivatives from the starting material. This would then further reduce the risk of teratoma formation and further increase the clinical relevance of the protocol we describe.
  • FACS fluorescence activated cell sorting
  • MSCs a number of candidate surface antigens known to be associated with MSCs e.g. CD105, CD73, ANPEP, ITGA4 (CD49d), PDGFRA
  • some of the MSC associated surface antigens e.g. CD29 and CD49e are also highly expressed in ES cells such as hESCs and their expression are verified by FACS analysis.
  • the association of a surface antigen with MSCs may not be sufficient to qualify the antigen as a selectable marker for isolating MSCs from ES cells such as hESC. Accordingly, the selection or sorting step may employ antigens which are differentially expressed between MSCs and ES cells.
  • the selection or sorting step of our method may positively select for mesenchymal stem cells based on the expression of antigens.
  • antigens may be identified by, for example, comparing the gene expression profiles of hESCs and hESCMSCs.
  • the selection or sorting may specifically make use of any of the antigens shown in Table E1A and E1B below.
  • the selection or sorting step of our method may positively select for mesenchymal stem cells based on the expression of antigens which are identified as expressed on MSCs, but not expressed on ES cells such as hESCs.
  • CD73 is highly expressed on MSCs, while being not highly expressed on hESCs. Both CD73 and CD105 are highly expressed surface antigens in MSCs and are among the top 20 highly expressed surface antigens in hESC-MSCs relative to hESC, the use of either CD73 or CD105 (or both) as selectable marker for putative MSCs will be equally effective in sorting for putative MSCs generated by differentiating hESCs.
  • the selection or sorting step may negatively select against antigens based on surface antigens that are highly expressed as surface antigen on embryonic stem cells (ES cells) such as hESCs, and not mesenchymal stem cells e.g., hESC-MSC. Selection or sorting may be based on known or previously identified hESC-specific surface antigens such as MIBP, ITGB1BP3 and PODXL, and CD24.
  • ES cells embryonic stem cells
  • hESC-MSC mesenchymal stem cells
  • CD24 may be used as a negative selection or sorting marker either on its own, or in conjunction with CD105 as a positive selectable marker for isolating putative MSCs from differentiating hESC cultures.
  • MSCs Mesenchymal stem cells derived from adult bone marrow have emerged as one of the most promising stem cell types for treating cardiovascular disease (Pittenger and Martin, 2004). Although the therapeutic effects of autologous MSCs have been attributed to their potential to differentiate into many different reparative or replacement cell types such as cardiomyocytes, endothelial cells and vascular smooth cells (Minguell and Erices, 2006; Zimmet and Hare, 2005), the differentiation efficiency of transplanted MSCs into therapeutically relevant numbers of functional reparative cells in injured tissues remains to be established.
  • a chemically defined serum free culture medium is conditioned by MSCs derived from human embryonic stem cells (hESCs), using a clinically compliant protocol.
  • MSCs derived from human embryonic stem cells (hESCs)
  • hESCs human embryonic stem cells
  • Three polyclonal, karyotypically stable, and phenotypically MSC-like cultures, that do not express pluripotency-associated markers but displayed MSC-like surface antigens (CD29+, CD44+, CD49a+/e+, CD105+, CD166+, CD34 ⁇ , CD45 ⁇ ) and gene expression profile, are generated by trypsinization and propagation of hESCs from either HuES9 hESC line or H1 hESC line in feeder- and serum-free selection media 15 .
  • HuES9.E1 can be stably expanded for at least 80 population doublings.
  • hESC-derived MSC cultures are transferred to a chemically defined, serum free culture medium to condition the medium for three days before the media containing MSC secretions are collected, clarified by centrifugation, concentrated 25 times using 10 kDa MW cut-off ultrafiltration membranes and sterilized by filtration through a 220 nm filter.
  • the secretory proteome is analyzed by multidimensional protein identification technology (MuDPIT) and cytokine antibody array analysis, and revealed the presence of 201 unique gene products. Computational analyses disclosed that this CM holds potential cytoprotective properties 16 .
  • the saline group is added to assess a potential effect of fresh, non-conditioned culture medium.
  • MI is induced by 75 minutes of proximal left circumflex coronary artery (LCxCA) ligation and 4 hours of subsequent reperfusion.
  • An ischemic period of 75 minutes is selected to inflict severe myocardial injury without inducing completely transmural myocardial infarction.
  • the 4 hour reperfusion period is used, because infarct size measurement using TTC staining is most reliable after 3 hours of reperfusion 17 . After longer periods of reperfusion, it becomes more difficult to assess oxidative stress status and apoptotic mechanisms.
  • Transonic flow probes Transonic Systems Inc, Ithaca, N.Y.
  • a wire is placed around the inferior caval vein to enable functional measurements under varying loading conditions for PV loops.
  • heparin After functional measurements, 10.000 IU of heparin are administered intravenously and sutures are tightened to occlude the proximal LCxCA. Internal defibrillation with 50 J is used when ventricular fibrillation occurred. After 75 minutes of ischemia, the LCxCA is reopened by release of the suture. Immediately following reperfusion, Nitroglycerine (0.1 mg to prevent no-reflow) is infused through the LCxCA via the guiding catheter, followed by intracoronary treatment with MSC-CM, non-CM or saline. After 4 hours of reperfusion, the final functional measurements are performed and the heart is explanted for infarct size analysis.
  • LV pressure and volume are measured using the conductance catheter method, as described previouslyl 18 .
  • LV pressure and volume signals derived from the conductance catheter are displayed and acquired at a 250-Hz sampling rate with a Leycom CFL-512 (CD Leycom).
  • SWT Systolic wall thickening
  • FAS fractional area shortening
  • LVEF left ventricular ejection fraction
  • the end-diastolic chamber stiffness is quantified by means of linear regression of the end-diastolic pressure-volume relationship. Echocardiography and PV loops are measured before MI, 1 hour after ischemia and 4 hours after reperfusion. To challenge stunned myocardium, additional measurements are performed during pharmaceutically induced stress by intravenous dobutamine infusion (2.5 ⁇ g/kg/min and 5.0 ⁇ g/kg/min).
  • the LCxCA pigs
  • LCA gallate
  • AAR area at risk
  • the heart is then excised, the LV is isolated and cut into 5 slices from apex to base.
  • the slices are incubated in 1% triphenyltetrazolium chloride (TTC, Sigma-Aldrich Chemicals, Zwijndrecht, the Netherlands) in 37° C.
  • Sörensen buffer (13.6 g/L KH 2 PO 4 +17.8 g/L Na 2 H PO 4 .2H 2 O, pH 7.4) for 15 minutes to discriminate infarct tissue from viable myocardium.
  • infarct size is calculated as a percentage of the AAR and of the LV.
  • Human leukemic CEM cells are incubated in either CM or non-CM, and treated with 50 ⁇ M H 2 O 2 to induce oxidative stress. Cell viability is assessed using Trypan Blue exclusion at 12, 24, 36 and 48 hours after H 2 O 2 treatment.
  • Nuclear oxidative stress in the ischemia and reperfusion area is assessed by immunostaining for 8-hydroxy-2′-deoxyguanosine (8-OHdG), a product of oxidative stress to DNA.
  • 8-OHdG 8-hydroxy-2′-deoxyguanosine
  • tissue sections are incubated with 10% normal horse serum for 30 minutes, mouse-anti-8-OHdG (OXIS international, Foster City, Calif., USA) 1:20 in 0.1% PBSA over night at 4° C., biotin labeled horse-anti-mouse (Vector laboratories, Burlingame, Calif., USA) 1:500 for 1 hour and with streptavidin-HRPO 1:1000 for 1 hour.
  • mouse-anti-8-OHdG OXIS international, Foster City, Calif., USA
  • biotin labeled horse-anti-mouse Vector laboratories, Burlingame, Calif., USA
  • the sections are incubated with H 2 O 2 -diaminobenzidine for 10 minutes.
  • the amount of 8-OHdG positive nuclei is quantified in 4 randomly picked fields per section with digital image microscopy software Analysis (Olympus, Weg, Germany) at 200 ⁇ magnification.
  • Protein is isolated from frozen tissue samples collected from the ischemia/reperfusion area of pigs using 1 ml Tripure Isolation Reagent (Boehringer, Mannheim, Germany) according to the manufacturer's protocol. For western blotting, 8 ⁇ g total protein is separated on a 10% SDS-PAGE gel, transferred onto a Nitrocellulose C membrane (Amersham, Buckinghamshire, UK) and blocked using Phosphate Buffered Saline (PBS)—0.1% Tween—5% Protifar (Nutricia, Netherlands).
  • PBS Phosphate Buffered Saline
  • the membrane is incubated with a rabbit antibody for phosphoSMAD2 1:1000 (Cell Signalling Technology), for active caspase 3 1:100 (Chemicon, Germany), or for beta-tubulin 1:5000 (Abcam, Cambridge, UK), and subsequently with goat-anti-rabbit HRP 1:2000 (DAKO, Glostrup, Denmark).
  • Chemiluminescence substrate NNk Life Science Products is used for detection; the bands are analyzed using the Gel Doc 1000 system (Biorad, Veenendaal, Netherlands).
  • the MSC-CM is prepared by sterile filtration through a 220 nm filter and concentrated through a 10 nm filter and therefore contains components between 10 and 220 nm. Subsequently, a ⁇ 1000 kDa fraction is prepared by filtering the MSC-CM through a 1000 kDa MW cut-off membrane with a 100 nm nominal pore size (Pall Corporation, Singapore), generating a fraction containing products between 10 and 100 nm.
  • a mouse or pig model of ischemia and reperfusion injury is used. MI is induced by 30 minutes left coronary artery (LCA) occlusion and subsequent reperfusion. Mice are treated with 20 ⁇ l unfractionated MSC-CM (10-220 nm), the ⁇ 1000 kDa fraction (10-100 nm), or saline intravenously via the tail vein, 5 minutes before reperfusion. Infarct size is assessed 24 hours later using Evans blue and TTC as described previously.
  • Infarct size compared to the area at risk (AAR) as well as compared to the LV, is markedly reduced in pigs treated with MSC-CM compared to those treated with non-CM and saline ( FIG. 1 ).
  • MSC-CM treatment resulted in approximately 60% reduction of infarct size.
  • the AAR is similar in all pigs, which indicates that the initial ischemic injury is similar in all pigs (Table E1 below).
  • Intravenous infusion of the ⁇ 1 -adrenergic receptor agonist dobutamine further increased systolic wall thickening in the MCS-CM treated pigs, whereas no improvement is seen in the control groups. Also global left ventricular systolic function decreased due to the ischemia ( FIG. 2B ). In the pigs treated with CM, the fractional area shortening increased after reperfusion, almost back to the baseline level, and increased above baseline level during dobutamine infusion.
  • CM nuclear oxidative stress in tissue sections of pigs treated with CM, non-CM or saline is quantified by 8-OHdG immunostaining for oxidized DNA. Intense nuclear staining indicative of DNA oxidation is observed in sections of non-CM or saline-treated pigs compared to CM-treated pigs ( FIGS. 3B-D ). In addition, there are also significantly more positive nuclei in non-CM or saline-treated pigs ( FIG. 3E ).
  • CM can confer cytoprotection against oxidative stress in vitro and in vivo.
  • CM treatment resulted in reduced pSMAD2 expression, indicating that TGF- ⁇ signaling via ALK-5 is reduced ( FIGS. 4A , B).
  • Reperfusion injury causes cell death through apoptosis rather than necrosis 20-22 .
  • CM treatment reduces apoptosis during reperfusion
  • active caspase-3 levels are lower compared to both non-CM control and saline control suggesting that CM inhibits apoptosis in vivo ( FIGS. 4C , D).
  • Unfractionated MSC-CM contains products between 10 and 220 nm. In order to come closer to identifying the cardioprotective factor(s) within the MSC-CM, a ⁇ 1000 kDa fraction is generated containing products ranging in size from 10-100 nm. Unfractionated MSC-CM confers cardioprotection, whereas the ⁇ 1000 kDa fraction does not ( FIG. 5 ), indicating that the cardioprotective factor(s) are in the >1000 kDa fraction with size ranging from 100 to 220 nm.
  • NCM non-conditioned medium
  • ITS insulin-transferrin-selenoprotein supplement
  • FGF2 FGF2, EGF and PDGF AB
  • proteins secreted by the cells are in complexes, and these secretion complexes are larger than 100 kD Proteins that are added exogenously to the culture medium as supplements, and that are less than 100 kD are readily filtered through membranes with MW cut off of 100 kD.
  • MI is induced by 30 minutes left coronary artery (LCA) occlusion by suture ligation and reperfusion is initiated by removal of suture.
  • Mice are treated with 20 ⁇ l unfractionated MSC-CM (10-220 nm), 20 ⁇ l of ⁇ 100 or 1,000 kD fraction, 4 ⁇ l of >1000 kD retentate or saline intravenously via the tail vein, 5 minutes before reperfusion. 24 hours later, the hearts are excised. Before excision, the Area At Risk (AAR) is determined by relegating the LCA and then perfusing Evans blue through the aorta. AAR is defined as the area not stained by the dye and is expressed as a percentage of the left ventricular wall area. Infarct size is assessed 24 hours later using Evans blue and TTC as described previously.
  • AAR Area At Risk
  • Electron microscopy analysis of the Conditioned Medium is performed using standard methodology. Briefly, the Conditioned Medium in PBS is loaded onto formwar carbon coated grids (Ted Pella Inc, Redding, Calif., USA cat no 01800N-F), fixed in 2.5% glutaraldehyde, washed, contrasted in 2% uranyl acetate, embedded in a mixture of uranyl acetate (0.8%) and methyl cellulose (0.13%), and examined under an electron microscope. Consistent with the size fractionation studies above, we observed the presence of numerous vesicles of ⁇ 50-150 nm, suggesting that these vesicles are the putative active complexes in the secretion ( FIG. 11 ).
  • the hydrophobic lipid/steroid components of Conditioned Medium and NCM are extracted by Folch procedure. Briefly, 50 ml of Conditioned Medium or NCM is vigorously mixed with 5 ml of chloroform and 2 ml of methanol. The organic and aqueous phases are allowed to separate. The bottom chloroform layer is removed and evaporated to dryness by speedvac.
  • the residue is reconstituted in methanol for LC-MS/MS analysis.
  • the sample is then injected to a normal-phase (silica phase) HPLC column with dichloromethane/methanol/water/ethylamine mobile phase.
  • the eluate is then ionized online by nanospray to LTQ-FTMS/Orbitrap.
  • the LTQ-FTMS/Orbitrap is run at alternate positive and negative modes for detection of lipid/steroid with different chemical properties.
  • the top 5 precursor ions of each MS scan are further analyzed by MS/MS scan
  • the molecules are therefore characterized by a combination of FTMS and LTQ.
  • the precursor mass of each tandem mass spectrum is first matched to a candidate in a lipid and metabolic database.
  • MS/MS spectra of ions that have a ⁇ 5 pmm mass error to any molecule in the database are then compared to known standard spectra or spectra predicted by Mass Frontier program
  • Mass spectrometry analysis of chloroform extract from the Conditioned Medium revealed the presence of lipids commonly found in plasma membrane, namely phospholipids, glycolipids, and steroids and also in exosomes 35 .
  • the phospholipids include phosphatidyl serine and phosphatidyl inositol, phosphatidyl choline, shingomyelin, ceramides; glycolipid such as cerebroside and steroids such as cholesterol.
  • exosomes has microdomains known as lipid rafts in their lipid membranes 22,24-35 41,42 .
  • Exosomes are cholesterol-rich and their cholesterol-phospholipid ratio generally exceed the ratio of 0.3-0.4 (mol/mol) ratio found in plasma membrane 35 .
  • These rafts are characterized by their resistance to dissolution by non-ionic detergents such as Triton X-100 or Brij-98 at low temperatures, and their sensitivity to cyclodextrin that binds cholesterol.
  • non-ionic detergents such as Triton X-100 or Brij-98 at low temperatures
  • Generally insoluble in detergents such as triton X-100 and detergent insolubility is often used to identify the presence of lipid rafts.
  • Trizol extraction of the Conditioned Medium followed by isopropanol precipitation as commonly used in the extraction of RNA from cells produces a pellet that in water has an 260:280 nm absorbance ratio of 1.9, suggesting that it may be RNA.
  • exosomes contain mRNAs and microRNAs 36 .
  • This pellet is assayed for sensitivity to RNase activity.
  • the Conditioned Medium will also treated with RNases before extraction with trizol. These assays determine if the pellet is RNA, and if the RNA is sequestered in lipid vesicles such as exosomes.
  • RNA is assayed by generic gene expression assays such as microarrary, sequencing, RT-PCR and in vitro translation assays to determine the composition and functions of RNA.
  • the RNAs are translated in vitro using standard commercially available reticulocyte lysate system with and without 15 N-leucine.
  • the translated protein products are identified by mass spectrometry.
  • the proteomic profile of the Conditioned Medium also describes the presence of proteins that are known to be membrane-bound. Some notable but not exhaustive examples include CD9, CD109, thy-1 20 . Other known surface antigen of exosome such as CD24 that is found on the surface of exosomes secreted in the urine 45 is not expressed in MSCs 19 or its secretion 20 .
  • the Conditioned Medium is biotinylated using standard commercially available biotinylation kits.
  • the proteins is separated on standard SDS-PAGE, transferred on nylon or nitrocellulose, and probed with avidin-peroxidase using standard protocols in western blot analysis. In this protocol, only proteins that are on the surfaces on the complexes and are physically accessible to biotin are biotinlyated. All the proteins that are within the complex and are therefore not physically accessible are be biotinylated.
  • the biotinylated proteins are also isolated using avidin-affinity chromatography and identify using LC/MS. The identity of these proteins is confirmed by western blot analysis, immunoelectron microscopy and gene expression of MSCs.
  • the suspension is assayed for the biological activities that are computationally predicted for the Conditioned Medium 20 , and is tested for cardioprotective effects in the mouse and pig models as described above or below, respectively.
  • the saline group is added to assess a potential effect of fresh, non-conditioned culture medium.
  • MI is induced by 75 minutes of proximal left circumflex coronary artery (LCxCA) ligation and 4 hours of subsequent reperfusion.
  • An ischemic period of 75 minutes is selected to inflict severe myocardial injury without inducing completely transmural myocardial infarction.
  • the 4 hour reperfusion period is used, because infarct size measurement using TTC staining is most reliable after 3 hours of reperfusion 46 .
  • MSC-CM 1.0 ml, 2.0 mg protein
  • non-CM 1.0 mg protein
  • saline an additional intracoronary bolus MSC-CM (4.0 ml, 8.0 mg protein), non-CM or saline is given.
  • Myocardial infarct size and function are assessed 4 hours after reperfusion.
  • MI left coronary artery
  • Mice are treated with unfractionated conditioned medium, ⁇ 1000 kD fraction, ⁇ 500 kD fraction, ⁇ 300 fraction kD, ⁇ 100 kD fraction or saline intravenously via the tail vein, 5 minutes before reperfusion. Infarct size is assessed the following day (24 hours after reperfusion).
  • the distal tip of a Swan Ganz catheter is placed into the pulmonary artery via the internal jugular vein.
  • Transonic flow probes Transonic Systems Inc, Ithaca, N.Y.
  • a wire is placed around the inferior caval vein to enable functional measurements under varying loading conditions for PV loops.
  • 10.000 IU of heparin are administered intravenously and sutures are tightened to occlude the proximal LCxCA. Internal defibrillation with 50 J is used when ventricular fibrillation occurred. After 75 minutes of ischemia, the LCxCA is reopened by release of the suture.
  • Nitroglycerine (0.1 mg to prevent no-reflow) is infused through the LCxCA via the guiding catheter, followed by intracoronary treatment with MSC-CM, non-CM or saline. After 4 hours of reperfusion, the final functional measurements are performed and the heart is explanted for infarct size analysis.
  • Mice are anesthetized with Fentanyl (0.05 mg/kg), Dormicum (5 mg/kg) and Domitor (0.5 mg/kg) and intubated using a 24-gauge intravenous catheter with a blunt end.
  • Mice are artificially ventilated at a rate of 105 strokes/min using a rodent ventilator with a mixture of O 2 and N 2 O (1:2 vol/vol) to which isoflurane (2.5-3.0% vol/vol) is added.
  • the mouse is placed on a heating pad to maintain the body temperature at 37° C.
  • the chest is opened in the third intercostal space and an 8-0 prolene suture is used to occlude the left coronary artery (LCA) for 30 minutes.
  • the chest is closed and the following day (24 hours later), the hearts are explanted for infarct size analysis.
  • LCA left coronary artery
  • the ECG, arterial pressure and cardiac output, are digitized at a sampling rate of 250 Hz and stored for offline analysis (Leycom CFL-512, CD Leycom).
  • Left ventricular (LV) pressure and volume are measured using the conductance catheter method, as described previously 47 .
  • LV pressure and volume signals derived from the conductance catheter are displayed and acquired at a 250-Hz sampling rate with a Leycom CFL-512 (CD Leycom).
  • Systolic wall thickening is calculated as [(WT(ES) ⁇ WT(ED))/WT(ED)]*100%, fractional area shortening (FAS) as [(LVia(ES) ⁇ LVia (ED))/LVia (ED)]*100%, and left ventricular ejection fraction (LVEF) as [(EDV ⁇ ESV)/EDV]*100%.
  • the end-diastolic chamber stiffness is quantified by means of linear regression of the end-diastolic pressure-volume relationship. Echocardiography and PV loops are measured before MI, 1 hour after ischemia and 4 hours after reperfusion. To challenge stunned myocardium, additional measurements are performed during pharmaceutically induced stress by intravenous dobutamine infusion (2.5 ⁇ g/kg/min and 5.0 ⁇ g/kg/min).
  • the LCxCA pigs
  • LCA gallate
  • Evans blue dye is infused through the coronary system to delineate the area at risk (AAR).
  • AAR area at risk
  • the slices are incubated in 1% triphenyltetrazolium chloride (TTC, Sigma-Aldrich Chemicals, Zwijndrecht, the Netherlands) in 37° C. Sörensen buffer (13.6 g/L KH 2 PO 4 +17.8 g/L Na 2 H PO 4 .2H 2 O, pH 7.4) for 15 minutes to discriminate infarct tissue from viable myocardium.
  • TTC triphenyltetrazolium chloride
  • infarct size is calculated as a percentage of the AAR and of the LV.
  • HuES9.E1 cells are cultured as described previously (Lian et al., 2007; Sze et al., 2007).
  • HuES9.E1 cell cultures are washed three times with PBS and cultured overnight in a chemically defined medium consisting of DMEM without phenol red (catalog number 31053, Invitrogen) and supplemented with insulin, transferrin, and selenoprotein (ITS) (Invitrogen), 5 ng/ml FGF2 (Invitrogen), 5 ng/ml PDGF AB (Peprotech, Rocky Hill, N.J.), glutamine-penicillin-streptomycin, and b-mercaptoethanol. The cultures are then rinsed three times with PBS, and then fresh defined medium is added.
  • DMEM without phenol red
  • ITS selenoprotein
  • CM sample is prepared by concentrating CM 50 ⁇ using 100 kDa MWCO tangential force filtration (TFF). All other concentrations are performed using ultrafiltration membrane. All CM and other differently processed CMs are 0.2 micron filtered after all procedures and before being stored or used.
  • CM dialyzed conditioned
  • NCM non-conditioned media
  • the samples are then desalted by passing the digested mixture through a conditioned Sep-Pak C-18 SPE cartridge (Waters, Milford, Mass., USA), washed twice with a 3% acetonitrile (ACN) (JT Baker, Phillipsburg, N.J.) and 0.1% formic acid (FA) buffer, and eluted with a 70% ACN and 0.1% FA buffer.
  • ACN 3% acetonitrile
  • F formic acid
  • the eluted samples are then dried to about 10% of their initial volumes by removing organic solvent in a vacuum centrifuge.
  • offline peptide fractionation is carried out with a HPLC system (Shimadzu, Japan) through a Polysulfoethyl SCX column (200 mm ⁇ 4.6 mm) (PolyLC, USA).
  • Mobile phase A (5 mM KH4PO4+30% acetonitrile)
  • mobile phase B (5 mM KH4PO4+30% acetonitrile+350 mM KCl) at 1 ml/min.
  • Eight fractions are collected and dried with a vacuum centrifuge.
  • Fractionated samples are loaded into the autosampler of a Shimadzu DGU-20A3 C18 reverse phase HPLC system coupled online to a LTQ-FT ultra linear ion trap mass spectrometer (Thermo Electron, San Jose, Calif.) fitted with a nano-spray source.
  • Injected peptides are trapped in a Zorvax 300SB-C18 enrichment column (5 mm ⁇ 03 mm, Agilent Technologies, Germany) and eluted into a nano-bored C18 packed column (75 ⁇ m ⁇ 100A, Michrom Bioresources, Auburn, Calif.).
  • a 90 minute gradient at 200nl/min flow rate is used to elute the peptides into the mass spectrometer.
  • the LTQ is operated in a data-dependent mode by performing MS/MS scans for the 8 of the most intense peaks from each MS scan in the FTMS.
  • MS/MS (dta) spectra of the eight SCX fractions are combined into a single mascot generic file by a home-written program.
  • Protein identification is achieved by searching the combined data against the IPI human protein database (version 3.34; 67,758 sequences) via an in-house Mascot server (Version 2.2, Matrix Science, UK).
  • the search parameters are: a maximum of 2 missed cleavages using trypsin; fixed modification is carbaminomethylation of cysteine and variable modifications is oxidation of methionine.
  • the mass tolerances are set to 20 ppm and 0.8 Da for peptide precursor and fragment ions respectively. Protein identifications are accepted as true positive if two different peptides are found to be with scores greater than the homology scores.
  • the instrument setup consisted of a liquid chromatography system with a binary pump, an auto injector, a thermostated column oven and a UV-visible detector operated by the Class VP software from Shimadzu Corporation (Kyoto, Japan).
  • the Chromatography columns used are TSK Guard column SWXL, 6 ⁇ 40 mm and TSK gel G4000 SWXL, 7.8 ⁇ 300 mm from Tosoh Corporation (Tokyo, Japan).
  • the following detectors, Dawn 8 (light scattering), Optilab (refractive index) and QELS (dynamic light scattering) are connected in series following the UV-visible detector.
  • the last three detectors are from Wyatt Technology Corporation (California, USA) and are operated by the ASTRA software.
  • the components of the sample are separated by size exclusion i.e. the larger molecules will elute before the smaller molecules.
  • the eluent buffer used is 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2. This buffer is filtered through a pore size of 0.1 ⁇ m and degassed for 15 minutes before use.
  • the chromatography system is equilibrated at a flow rate of 0.5 ml/min until the signal in Dawn 8 stabilized at around 0.3 detector voltage units.
  • the UV-visible detector is set at 220 nm and the column is oven equilibrated to 25° C.
  • the elution mode is isocratic and the run time is 40 minutes.
  • the volume of sample injected ranged from 50 to 100 ⁇ l.
  • the % area of the exosome peak vs. all other peaks is integrated from the UV-visible detector.
  • the hydrodynamic radius, R h is computed by the QELS and Dawn 8 detectors.
  • the highest count rate (Hz) at the peak apex is taken as the R h .
  • Peaks of the separated components visualized at 220 nm are collected as fractions for further characterization studies.
  • sucrose gradient density equilibrium centrifugation 14 sucrose solutions with concentrations from 22.8-60% (w/v) are prepared. The most concentrated solution is layered at the bottom of SW60Ti ultracentrifuge tube (Beckman Coulter Inc., Fullerton Calif., USA), followed by the next highest sucrose concentration. CM is carefully loaded on top before ultracentrifuged for 16.5 hours at 200,000 ⁇ g, 4° C. in a SW60Ti rotor (Beckman Coulter Inc.). 16 fractions are collected from top to the bottom of the sucrose gradient. The densities of all the sucrose fractions are calculated using a microbalance, and consolidated into to 13 fractions.
  • the CM is pretreated with a cell lysis buffer (Cell Extraction Buffer, Biovision, www.BioVision.com) before being loaded on sucrose gradient density equilibrium centrifugation.
  • the lysis buffer is added to CM in a 1:1 volume ratio with cocktail of protease inhibitors (Halt Protease Inhibitor Cocktail, EDTA-Free, Thermo Scientific, www.thermofisher.com).
  • the mixture is incubated for 30 min at room temperature with gentle shaking.
  • Protein concentration of CM is quantified using NanoOrange Protein Quantification kit (Invitrogen) according to the manufacturer's instructions.
  • CM Total proteins of CM are separated on polyacrylamide gels, before transfer to a nitrocellulose membrane (Amersham Biosciences, Uppsala, Sweden).
  • the membrane is blocked, incubated with mouse antibodies against human CD9, CD81, SOD-1, pyruvate kinase, Alix, Tsp-1 followed by horseradish peroxidase-coupled secondary antibodies against the mouse primary antibody.
  • the blot is then incubated with a chemiluminescent HRP substrate to detect bound primary antibody, and therefore the presence of the antigen.
  • Cholesterol, sphingomyelin and phosphatidylcholine concentrations in two independent preparations of CM and pellet from the ultracentrifugation of CM at 100,000 ⁇ g for 2 hours at 4° C. are measured using commercially available assay kits. Cholesterol is measured using Amplex® Red Cholesterol Assay kit (Molecular Probes, USA), sphingomyelin by the Sphingomyelin Assay Kit (Cayman Chemical Company, Ann Arbor, Mich., USA) and phosphatidylcholine is measured using the Phosphatidylcholine Assay Kit (Cayman Chemical Company, Ann Arbor, Mich., USA).
  • CM is treated with/without triton x or lysis buffer for 30 min at 4° C. with gentle shaking.
  • Proteolytic digestion is allowed to carry out by adding trypsin to the treated CM for 3 seconds to 20 minutes at room temperature with gentle shaking. The digestion is stopped using a trypsin inhibitor, PMSF.
  • RNA microarray Two biological replicates of total cellular RNA from MSCs and two biological replicates of secreted RNA from CM are analysed by miRNA microarray.
  • the hybridization and data analysis is outsourced to LC Sciences, LLC (www.LCsciences.com).
  • the chip contained probes for miRNA transcripts listed in Sanger miRBase Release 10.1 (http://www.sanger.ac.uk/Software/Rfam/mirna/).
  • CM that is concentrated by ⁇ 125 times against a similar membrane is cardioprotective in a mouse model of ischemia/reperfusion injury.
  • filteration through filters with a MWCO smaller than 0.2 ⁇ m such as 100 kDa, 300 kDa, 500 kDa or 1000 kDa are not cardioprotective ( FIG.
  • CM that is concentrated against a 1000 kDa membrane (Timmers et al., 2008) or a 100 kDa membrane is cardioprotective ( FIG. 14 ).
  • the active fraction consisted of large complexes of >1000 kDa or having a diameter of 50-100 nm.
  • the particles in the CM are exosomes. Exosomes are formed from multivesicular bodies (Fevrier and Raposo, 2004; Keller et al., 2006) with a bilipid membrane that has the same orientation as plasma membrane. They are known to be produced by many cell types and are thought to be important in intercellular communications.
  • Exosomes have diameters of 40-100 nm. Exosomes have been shown to be secreted by many cell types and the protein composition of these exosomes appeared to be cell specific. However, some proteins such as CD9, pyruvate kinase and alix appear to be commonly expressed in the exosomes (Sze et al., 2007). We have previously identified about 201 proteins in the secretion (Sze et al., 2007).
  • TSP-1, SOD-1 and pyruvate kinase did not co-immunoprecipitated with CD81, suggesting that these proteins are not present in CD81+ exosomes or not present in exosomes at all. ( FIG. 15 ).
  • TIMP1, TIMP2, TNFRSF11B, LGALS3, ALCAM, DCN, SFRP1, GDF15, PDGFC, PTX3, LTBP1, IGFBP2, GREM1, IGFBP7, MIF, MMP1, PLAU, INHBA and THBS1 were identified by LC MS/MS and antibody array, PPIA, HIST1H4, PPIB, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4H, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, HIST2H2AA3, HIST2H2AA4, HIST2H4A, HIST2H 4 B, HIST4H4, HLA-A, HLA-B, SDCBP, TUBA1A, TUBA6, TUBA8, GAPDH, TUBB, TUBB2C
  • GPC5, IGF2R, CHRDL1, GRN, VEGFC, IL13, IL15, EML2, IL15RA, IL1RAP, MMP10, IL2, GZMA, IL21R, IL3, IL6, IL6ST, IL8, HGF and THBS are identified by antibody array.
  • the remaining proteins are identified by LC MS/MS.
  • the CM is ultracentrifuged at 200,000 g for two hours. There is a >200 fold enrichment of CD9 an exosome-associated protein in the pellet with no detectable level of CD9 in the supernatant ( FIG. 16 ). Ultracentrifugation at 100,000 g for one hour is not sufficient to sediment all the CD9 ( FIG. 16 ). Filtration of the CM through a filter with a MWCO of 500 kDa followed by centrifugation of either the filtrate or retentate at 200,000 g for 2 hours generated a pellet in the retentate fraction ( FIG. 16 ). CD9 which had MW of 19 kDa respectively are highly enriched in this pellet.
  • the CM is fractionated on a sucrose density gradient by equilibrium ultracentrifugation.
  • the density of exosomes ranges from 1.13 g ml ⁇ 1 to 1.19 g ml-1 and float on sucrose gradients. Flotation on sucrose gradients readily separate exosomes from contaminating material such as protein aggregates or nucleosomal fragmentst (Thery et al., 2002). Fractions from the sucrose gradient are then analysed for the presence CD9, CD81, Tsp1, SOD-1 and pyruvate kinase along the gradient ( FIG.
  • CM is treated with a cell lysis buffer ( FIG. 17B ) before being fractionated on a sucrose density gradient.
  • This pre-treatment with a plasma membrane solubilization reagent restored each of the apparent densities to the expected density of proteins that correlated to their molecular weight. Therefore, the exosome-associated proteins are localized in lipid vesicles, consistent with our exosome hypothesis.
  • the concentration of sphingomyelin and phosphatidylcholine, the major phospholipids of the plasma membrane, and cholesterol is determined ( FIG. 17C ).
  • the relative concentration of these lipids per ⁇ g protein is higher in the CM relative to the non-conditioned medium.
  • ultracentrifugation of the CM at 200,000 g for 2 hours significantly increased the concentration of the lipids ( FIG. 17C ).
  • exosome-associated proteins include many known membrane proteins such as CD9 and cytosolic proteins such as SOD1, we therefore determined if these proteins are similarly localized on the lipid membrane and lumen of the vesicles.
  • CM is subjected to limited trypsinization over time ( FIG. 18A ).
  • CD9 which has a similar MW as SOD1 is relatively more susceptible to trypsin digest than SOD1.
  • Digestion of SOD1 is observed only after more than 50% of CD9 had been digested ( FIG. 18A ).
  • tryptic digestion of CD9 generated three tryptic peptide intermediates, suggesting that CD9 has domains with different trypsin-sensitivity.
  • the three susceptible tryptic peptide intermediates are mapped to the transmembrane or cytoplasmic domains.
  • CD9 a known membrane protein is also membrane-bound in the exosome and is oriented in the same direction as CD9 in the plasma membrane while cytosolic SOD-1 is localized in the lumen and could be digested only when the integrity of the membrane is compromised by the digestion of membrane proteins.
  • RNAs are secreted by cells in exosomes (Smalheiser, 2007; Taylor and Gercel-Taylor, 2008; Valadi et al., 2007).
  • CM is extracted for RNA by Trizol to yield 5-6 ug RNA per mg protein.
  • FIG. 19A When separated on a glyoxal-agarose gel ( FIG. 19A ) or an urea-PAGE ( FIG. 19B ), the RNA contained undetectable level of 18S and 28S ribosomal RNA with most RNAs being ⁇ 300 nt.
  • RNAse are protected by a lipid membrane, analogous to a cell membrane by treating the CM with a SDS-based cell lysis buffer, cylcodextrin or phospholipase A2. After treatment with one of the four reagents, the CM is exposed to RNAse and then extracted for RNA.
  • RNAs of ⁇ 70-100 nt are more sensitive to RNAse III activity than those of smaller MW, suggesting that the larger RNAs are double stranded ( FIG. 19D ).
  • RNAs are shown to be in lipid vesicles, we next determined the buoyant density of these vesicles using sucrose gradient equilibrium ultracentrifugation.
  • CM CM pretreated with lysis buffer or a set of RNA MW markers is loaded onto a sucrose density gradient and ultracentrifuged as described in FIGS. 4 a, b .
  • the gradients are then removed in thirteen fractions and each fraction is then extracted for RNA.
  • the secreted RNAs equilibrated at a density of 1.074-1.1170 g/ml ( FIG. 20 ).
  • RNA MW markers exhibited a buoyant density of 1.115-1.1170 g/ml and pretreatment of the CM with lysis buffer before centrifugation caused an increase in density of the secreted RNA to that of RNA MW markers i.e. 1.115-1.145 g/ml ( FIG. 20C ). These observations are therefore consistent with the RNAs being encapsulated in a lipid vesicle and thus had an apparent density that is much lower than soluble RNA. Pretreatment of the CM with lysis buffer released the RNA and resulted in the RNA sedimenting at the density of RNA markers.
  • RNA-containing Vesicles are not in CD81 Containing Exosomes
  • CD9, CD81 and Alix are co-immunoprecipitated by anti CD81 antibodies.
  • RNA also immunoprecipitate with CD81. After immunoprecipitation, the RNA is not present in the precipitate but remained in the supernatant ( FIG. 21 ). Therefore, the secreted RNAs are not sequestered in CD81+, CD81+CD9+, or CD81+CD9+Alix+ vesicles.
  • miRNAs are present in both MSC and CM. These are: hsa-let-7a, hsa-miR-149*, hsa-miR-214, hsa-let-7b, hsa-miR-221, hsa-let-7c, hsa-miR-26a, hsa-miR-151-5p, hsa-miR-222, hsa-let-7d, hsa-miR-100, hsa-miR-320, hsa-let-7e, hsa-miR-103, hsa-let-7f, hsa-miR-181a, hsa-miR-574-3p, hsa-miR-574-5p, hsa-let-71, hsa-miR-107, hsa-miR-575, hsa-miR-125a-5p
  • 16 miRNAs are detectable in the CM but are present at below detection level in MSCs. These are: hsa-let-7b*, hsa-miR-124, hsa-miR-296-5p, hsa-miR-765, hsa-miR-1228, hsa-miR-1238, hsa-let-7d*, hsa-miR-150*, hsa-miR-493*, hsa-miR-933, hsa-miR-1234, hsa-miR-122, hsa-miR-198, hsa-miR-572, hsa-miR-1224-5p an dhsa-miR-1237.
  • miRNAs are present in MSC only: hsa-miR-24-2*, hsa-miR-98, hsa-miR-484, hsa-miR-25, hsa-miR-99a, hsa-miR-151-3p, hsa-miR-491-5p, hsa-miR-99b, hsa-miR-503, hsa-miR-26b, hsa-miR-152, hsa-miR-505*, hsa-miR-27a, hsa-miR-155, hsa-miR-324-5p, hsa-miR-532-5p, hsa-miR-27b, hsa-miR-106a, hsa-miR-328, hsa-let-7g, hsa-miR-27b*
  • CM contained significant levels of anti-guide miRNA (denoted with an asterisk).
  • the relative ratios of let7b to let7b*, let7d to let7d* and miR-191 to miR-191* in CM are much reduced compared to that in the MSCs ( FIG. 22B ).
  • cleavage of the stem-loop pre-miRNA generates the mature guide miRNA and the anti-guide miRNA*. The latter is usually degraded in the cell.
  • One possible explanation for the low ratio of guide miRNA to anti-guide miRNA is that microRNAs in the secretion are pre-miRNAs, and not mature RNAs.
  • RNAse III treatment will confirm the presence of pre-miRNA by degrading the pre-miRNA and render it undetectable by RT-PCR.
  • Cardioprotective Secretion Contains only Particles with Hydrodynamic Radius of 45-55 nm in the Detectable Range of 1-1000 nm
  • CM and NCM is first separated by size exclusion on a HPLC ( FIG. 13 ) and each eluting peak as measured by absorbance at 220 nm is then examined for dynamic light scattering (DLS) using a quasi-elastic light scattering (QELS) detector.
  • DLS dynamic light scattering
  • QELS quasi-elastic light scattering
  • this eluting peak are harvested and tested in a mouse model of myocardial ischemia/reperfusion injury as previously described above and in (Timmers et al., 2008).

Abstract

We describe a particle secreted by a mesenchymal stem cell and comprising at least one biological property of a mesenchymal stem cell. The biological property may comprise a biological activity of a mesenchymal stem cell conditioned medium (MSC-CM) such as cardioprotection or reduction of infarct size. The particle may comprise a vesicle or an exosome.

Description

    FIELD
  • The present invention relates to the fields of development, cell biology, molecular biology and genetics. More particularly, the invention relates to a method of deriving mesenchymal stem cells from embryonic stem cells.
    • BACKGROUND
  • Stem cells, unlike differentiated cells, have the capacity to divide and either self-renew or differentiate into phenotypically and functionally different daughter cells (Keller, Genes Dev. 2005; 19:1129-1155; Wobus and Boheler, Physiol Rev. 2005; 85:635-678; Wiles, Methods in Enzymology. 1993; 225:900-918; Choi et al, Methods Mol Med. 2005; 105:359-368).
  • Mesenchymal stem cells (MSCs) are multipotent stem cells that have documented evidence of therapeutic efficacy in treating musculoskeletal injuries, improving cardiac function in cardiovascular disease and ameliorating the severity of GVHD (Le Blanc and Pittenger, 2005). Being lineage restricted, they have limited but robust potential to differentiate into mesenchymal cell types, e.g adipocytes, chondrocytes and osteocytes, and have negligible risk of teratoma formation. Host immune rejection of transplanted MSCs is routinely circumvented through autologous or allogeneic transplantation. MSCs can be isolated from several adult tissues including bone marrow (BM), adipose tissues (ad), cord blood and expanded ex vivo.
  • Mesenchymal stem cells have been used in clinical and preclinical applications to treat a wide range of diseases1,2 including musculoskeletal tissue bioengineering3,4 and heart disease5,6. The therapeutic capacity of MSCs to treat a wide spectrum of diseases in clinical and preclinical applications to treat a wide range of diseases [A1,A2] e.g. GVHD [A1] in musculoskeletal tissue bioengineering [A3,A4] and heart disease [A5,A6] has been attributed to their potential to differentiate into many different reparative cell types.
  • However, availability of tissues for their isolation remains limiting and requires risky invasive procedures, and ex vivo expansion of MSCs while significant, is nonetheless finite. However, the efficiency of transplanted MSCs to differentiate into functional reparative cells in the injured tissues or organs, and in therapeutically relevant numbers have never been adequately documented or demonstrated.
  • Recent reports have suggested that some of these reparative effects may be mediated by paracrine factors secreted by the MSCs7. These factors are postulated to promote arteriogenesis through paracrine mechanisms8, support the stem cell crypt in the intestine9, protect against ischemic renal10,11, myocardial12,15 and limb tissue injuryl16; support and maintain hematopoiesis17, support formation of megakaryocyte and pro-platelet18.
  • There is an unmet need for an “off-the-shelf” MSC-based therapeutic option, at affordable costs, with better quality control and consistency. This is a requisite for time-sensitive protection against injury such as reperfusion injury in patients with acute MI,.
    • SUMMARY
  • According to a 1st aspect of the present invention, we provide a particle secreted by a mesenchymal stem cell and comprising at least one biological property of a mesenchymal stem cell.
  • The biological property may comprise a biological activity of a mesenchymal stem cell conditioned medium (MSC-CM). The biological activity may comprise cardioprotection. The particle may be capable of reducing infarct size.
  • Reduction of infarct may be assayed in a mouse or pig model of myocardial ischemia and reperfusion injury.
  • The particle may be capable of reducing oxidative stress. The reduction of oxidative stress may be assayed in an in vitro assay of hydrogen peroxide (H2O2)-induced cell death.
  • The particle comprise a vesicle. The particle may comprise an exosome.
  • The particle may contain at least 70% of proteins in an mesenchymal stem cell conditioned medium (MSC-CM). The proteins may be selected from the list shown in Table D1 or may be gene products of the genes shown in Table D2.
  • The particle may comprise a complex of molecular weight >100 kDa. The complex of molecular weight >100 kDa may comprise proteins of <100 kDa. The particle may comprise a complex of molecular weight >300 kDa. The complex of molecular weight >100 kDa may comprise proteins of <300 kDa.
  • The particle may comprise a complex of molecular weight >1000 kDa. The particle may have a size of between 2 nm and 200 nm. The particle may have a size of between 50 ηm and 150 nm. The particle may have a size of between 50 nm and 100 nm.
  • The size of the particle may be determined by filtration against a 0.2 μM filter and concentration against a membrane with a molecular weight cut-off of 10 kDa. The size of the particle may be determined by electron microscopy.
  • The particle may comprise a hydrodynamic radius of below 100 nm. It may comprise a hydrodynamic radius of between about 30 nm and about 70 nm. It may be between about 40 nm and about 60 nm, such as between about 45 nm and about 55 nm. The mesenchymal stem cell particle may comprise a hydrodynamic radius of about 50 nm. The hydrodynamic radius may be determined by laser diffraction or dynamic light scattering.
  • The particle may comprise a lipid selected from the group consisting of: phospholipid, phosphatidyl serine, phosphatidyl inositol, phosphatidyl choline, shingomyelin, ceramides, glycolipid, cerebroside, steroids, cholesterol. The cholesterol-phospholipid ratio may be greater than 0.3-0.4 (mol/mol). The particle may comprise a lipid raft.
  • The particle may be insoluble in non-ionic detergent, preferably Triton-X100. The particle may be such that proteins of the molecular weights specified substantially remain in the complexes of the molecular weights specified, when the particle is treated with a non-ionic detergent.
  • The particle may be sensitive to cyclodextrin, preferably 20 mM cyclodextrin. The particle may be such that treatment with cyclodextrin causes substantial dissolution of the complexes specified.
  • The particle may comprise ribonucleic acid (RNA). The particle may have an absorbance ratio of 1.9 (260:280 nm). The particle may comprise a surface antigen selected from the group consisting of: CD9, CD109 and thy-1.
  • There is provided, according to a 2nd aspect of the present invention, a method of producing a particle according to any preceding claim, the method comprising isolating the particle from a mesenchymal stem cell conditioned medium (MSC-CM).
  • The method may comprise separating the particle from other components based on molecular weight, size, shape, composition or biological activity.
  • The weight may be selected from the weights set out above. The size may be selected from the sizes set out above. The composition may be selected from the compositions set out above. The biological activity may be selected from the biological activities set out above.
  • We provide, according to a 3rd aspect of the present invention, a method of producing a particle according as described above. The method may comprise obtaining a mesenchymal stem cell conditioned medium (MSC-CM). It may comprise concentrating the mesenchymal stem cell conditioned medium. The mesenchymal stem cell conditioned medium may be concentrated by ultrafiltration over a >1000 kDa membrane. The method may comprise subjecting the concentrated mesenchymal stem cell conditioned medium to size exclusion chromatography. A TSK Guard column SWXL, 6×40 mm or a TSK gel G4000 SWXL, 7.8×300 mm column may be employed. The method may comprise selecting UV absorbant fractions, for example, at 220 nm, that exhibit dynamic light scattering. The dynamic light scattering may be detected by a quasi-elastic light scattering (QELS) detector. The method may comprise collecting fractions which elute with a retention time of 11-13 minutes, such as 12 minutes.
  • We provide, according to a 4th aspect of the present invention, a pharmaceutical composition comprising a particle as described together with a pharmaceutically acceptable excipient, diluent or carrier.
  • As a fourth aspect of the present invention, there is provided such a particle or such a pharmaceutical composition for use in a method of treating a disease.
  • We provide, according to a 5th aspect of the present invention, use of such a particle for the preparation of a pharmaceutical composition for the treatment of a disease.
  • The present invention, in a 6th aspect, provides use of such a particle in a method of treatment of a disease in an individual.
  • The disease may be selected from the group consisting of: cardiac failure, bone marrow disease, skin disease, burns and degenerative diseases such as diabetes, Alzheimer's disease, Parkinson's disease and cancer.
  • The disease may be selected from the group consisting of: myocardial infarction, a cutaneous wound, a dermatologic disorder, a dermatological lesion, dermatitis, psoriasis, condyloma, verruca, hemangioma, keloid, skin cancer, atopic dermatitis, Behcet disease, chronic granulomatous disease, cutaneous T cell lymphoma, ulceration, a pathological condition characterised by initial injury inducing inflammation and immune dysregulation leading to chronic tissue remodeling including fibrosis and loss of function, renal ischemic injury, cystic fibrosis, sinusitis and rhinitis or an orthopaedic disease.
  • The particle may be used to aid wound healing, scar reduction, bone formation, a bone graft or bone marrow transplantation in an individual.
  • The particle may be used (i) in the regulation of a pathway selected from any one or more of the following: cytoskeletal regulation by Rho GTPase, cell cycle, integrin signalling pathway, Inflammation mediated by chemokine & cytokine signaling pathway, FGF signaling pathway, EGF receptor signaling pathway, angiogenesis, plasminogen activating cascade, blood coagulation, glycolysis, ubiquitin proteasome pathway, de novo purine biosynthesis, TCA cycle, phenylalanine biosynthesis, heme biosynthesis; (ii) in the regulation of processes including any one or more of the following: cell structure and motility, cell structure, cell communication, cell motility, cell adhesion, endocytosis, mitosis, exocytosis, cytokinesis, cell cycle, immunity and defense, cytokine/chemokine mediated immunity, macrophage-mediated immunity, granulocyte-mediated immunity, ligand-mediated signaling, cytokine and chemokine mediated signaling pathway, signal transduction, extracellular matrix protein-mediated signaling, growth factor homeostasis, receptor protein tyrosine kinase signaling pathway, cell adhesion-mediated signaling, cell surface receptor mediated signal transduction, JAK-STAT cascade, antioxidation and free radical removal, homeostasis, stress response, blood clotting, developmental processes, mesoderm development, skeletal development, angiogenesis, muscle development, muscle contraction, protein metabolism and modification, proteolysis, protein folding, protein complex assembly, amino acid activation, intracellular protein traffic, other protein targeting and localization, amino acid metabolism, protein biosynthesis, protein disulfide-isomerase reaction, carbohydrate metabolism, glycolysis, pentose-phosphate shunt, other polysaccharide metabolism, purine metabolism, regulation of phosphate metabolism, vitamin metabolism, amino acid biosynthesis, pre-mRNA processing, translational regulation, mRNA splicing; or (iii) in the supply of functions including any one or more of the following: signaling molecule, chemokine, growth factor, cytokine, interleukin, other cytokine, extracellular matrix, extracellular matrix structural protein, other extracellular matrix, extracellular matrix glycoprotein, protease, metalloprotease, other proteases, protease inhibitor, metalloprotease inhibitor, serine protease inhibitor, oxidoreductase, dehydrogenase, peroxidase, chaperone, chaperonin, Hsp 70 family chaperone, other chaperones, synthetase, synthase and synthetase, select calcium binding protein, aminoacyl-tRNA synthetase, lyase, isomerase, other isomerase, ATP synthase, hydratase, transaminase, other lyase, other enzyme regulator, select regulatory molecule, actin binding cytoskeletal protein, cytoskeletal protein, non-motor actin binding protein, actin and actin related protein, annexin, tubulin, cell adhesion molecule, actin binding motor protein, intermediate filament, ribonucleoprotein, ribosomal protein, translation factor, other RNA-binding protein, histone, calmodulin related protein, vesicle coat protein.
  • In a 7th aspect of the present invention, there is provided a delivery system for delivering a particle, comprising a source of particle together with a dispenser operable to deliver the particle to a target.
  • According to an 8th aspect of the present invention, we provide use of such a delivery system in a method of delivering a particle to a target.
  • The practice of the present invention will employ, unless otherwise indicated, conventional techniques of chemistry, molecular biology, microbiology, recombinant DNA and immunology, which are within the capabilities of a person of ordinary skill in the art. Such techniques are explained in the literature. See, for example, J. Sambrook, E. F. Fritsch, and T. Maniatis, 1989, Molecular Cloning: A Laboratory Manual, Second Edition, Books 1-3, Cold Spring Harbor Laboratory Press; Ausubel, F. M. et al. (1995 and periodic supplements; Current Protocols in Molecular Biology, ch. 9, 13, and 16, John Wiley & Sons, New York, N.Y.); B. Roe, J. Crabtree, and A. Kahn, 1996, DNA Isolation and Sequencing: Essential Techniques, John Wiley & Sons; J. M. Polak and James O'D. McGee, 1990, Oligonucleotide Synthesis: A Practical Approach, Irl Press; D. M. J. Lilley and J. E. Dahlberg, 1992, Methods of Enzymology: DNA Structure Part A: Synthesis and Physical Analysis of DNA Methods in Enzymology, Academic Press; Using Antibodies: A Laboratory Manual: Portable Protocol NO. I by Edward Harlow, David Lane, Ed Harlow (1999, Cold Spring Harbor Laboratory Press, ISBN 0-87969-544-7); Antibodies: A Laboratory Manual by Ed Harlow (Editor), David Lane (Editor) (1988, Cold Spring Harbor Laboratory Press, ISBN 0-87969-314-2), 1855; and Lab Ref: A Handbook of Recipes, Reagents, and Other Reference Tools for Use at the Bench, Edited Jane Roskams and Linda Rodgers, 2002, Cold Spring Harbor Laboratory, ISBN 0-87969-630-3. Each of these general texts is herein incorporated by reference.
    • BRIEF DESCRIPTION OF THE FIGURES
  • FIG. 1. Myocardial Infarct Size. Representative pictures of Evans blue (blue) and TTC (red) staining on hearts of pigs treated with non-CM (A), CM (B) or saline (C). Myocardial infarct size quantifications as a percentage of the left ventricle (LV) and the area at risk (AAR) are shown in Figures D and E, respectively. Non-CM, n=9; CM, n=9; saline, n=8.
  • FIG. 2. Local and Global systolic function. Local systolic wall thickening as assessed with echocardiography of the infarct area in pigs treated with Non-CM, CM or saline (A). Global systolic function, echocardiographic fractional area shortening (FAS) is shown in Figure B. Non-CM, n=9; CM, n=9; saline, n=8. * p<0.05 vs. Non-CM and saline.
  • FIG. 3. Oxidative Stress. Viability of CEM cells in either CM or Non-CM and treated with H2O2. (* p<0.05, A). Conditioned medium protects cells from death induced by H2O2. To assess oxidative stress in vivo, infarct area sections from pigs treated with Non-CM (B), CM (C), or saline (D) were stained for 8-OHdG, a product of nuclear oxidative stress. Quantification of 8-OHdG positive nuclei was assessed at 200× magnification and is depicted in Figure E. Also in vivo, CM reduces oxidative stress. Non-CM, n=9; CM, n=9; saline, n=8.
  • FIG. 4. TGF-β Signaling and Apoptosis. Western blot for phosphorylated SMAD 2 (A, B) and active caspase 3 (C, D) in pigs treated with non-CM, CM or saline. Beta-tubulin was assessed as a loading control, and no differences were found in beta-tubulin expression between the groups (E). Non-CM, n=9; CM, n=9; saline, n=8.
  • FIG. 5. Cardioprotective Properties of CM Fractions. Myocardial infarct size quantification in mice treated with saline, <1000 kD fraction of CM or unfractionated CM. Unfractionated conditioned medium significantly reduces myocardial infarct size compared to saline treated animals. The <1000 kDa fraction, however does not, indicating that the cardioprotective factor(s) is/are larger than 1000 kDa. Saline, n=10; <1000 kD, n=8; unfractionated, n=12. * p<0.01 vs. saline.
  • FIG. 6. Chemically defined medium conditioned by hESC-MSC HuES9.E1 cells for three days was filtered through a 0.22 μfilter. The conditioned medium (CM) was concentrated 25 times by filtering through a membrane with a 10 kD MW cut-off. The concentrated CM was then centrifuged through a membrane with either a 100 kD or a 300 kD MW cut-off resulting in a 4:1 (vol:vol) filtrate to retentate ratio. The unfractionated CM, filtrate and retentate samples were loaded in the volume ratio of 5:4:1
  • FIG. 7. Identity of components in the filtrate after filtration through a membrane with a 100 kD MW cut-off. a) comparison of protein components in filtrate vs protein components in the non-conditioned medium (NCM). Conditioned medium (CM), the filtrate after CM was filtered through membrane with a 100 kD MW cut-off (100 kD filtrate) and NCM was separated on a SDS-PAGE. The gel was stained with silver to visualize protein bands; b) CM was filtered through a 100 kD MW cut-off membrane to produce a retentate to filtrate volume ratio of 4:1. The retentate, filtrate, and the different protein supplements in the chemically defined medium, namely insulin-transferin-selenoprotein, FGF2, EGF and PDGF AB were separated on a SDS-PAGE The retentate and filtrate was loaded in a volume ratio of 4:1
  • FIG. 8. Relative sizes of biological materials and pore sizes in membranes. Reprint from Spectrum© Laboratory.
  • FIG. 9. Relative AAR in mice after ischemia/reperfusion. Myocardial infarction was induced by left coronary artery (LCA) occlusion by suture ligation for 30 minutes, and reperfusion was initiated by removal of suture. Five minutes before reperfusion, mice were treated with tail vein injection of 20 μl unfractionated MSC-CM (10-220 nm), 20 μl of <100 or 1,000 kD fraction, 4 μl of >1000 kD retentate or saline. 24 hours later, the hearts were excised. Before excision, the Area At Risk (AAR) was determined by religating the LCA and then perfusing Evans blue through the aorta. AAR was defined as the area not stained by the dye and was expressed as a percentage of the left ventricular wall area.
  • FIG. 10. Effects of conditioned media and fractionated conditioned media on relative infarct size in mice after ischemia/reperfusion. After excision of the heart, infarct size was assessed 24 hours later using TTC and expressed as a percentage of AAR.
  • FIG. 11. Physical entities of between 50-100 nm in diameter were observed using electron microscopy.
  • FIG. 12. Size fractionation of CM after treatment with Triton X-100, CM was treated with a final 0.5 or 1.0% (v/v) TritonX-100 for 30 minutes and then fractionate by filtration through a membrane with MW cut-off of 100 kD to generate a filtrate:retentate volume ratio of 4:1.
  • FIG. 13. Proteins found from MS/MS analysis that are common to exosomes from different cell types44.
  • FIG. 14. Cardioprotective Properties of CM Fractions. Myocardial infarct size quantification in mice treated with saline, HEK293 conditioned medium, unfractionated hESC-CM, CM filtered with MWCO of 100 kDa, 300 kDa, 500 kDa, and 1000 kDa or CM concentrated 50 times against membrane with MWCO of 100 kDa fraction of CM or unfractionated CM.
  • FIG. 15. Immunoprecipitation. CM immunoprecipitated with anti-CD81 or mouse IgG as negative control. The immunoprecipitate and supernatant were analysed by western blot hybridization using antibody against CD9, Alix, Tsp-1, pyruvate kinase and SOD1.
  • FIG. 16. Ultracentrifugation of CM. CM was concentrated five times by filtering through a membrane with MWCO of 500 kDa. The retentate, and the unfiltered CM were ultracentrifuged at 200,000 g for 2 hour. The supernatant and the pellet were analysed by western blotting for the presence of CD9. Lane 1-3: different protein concentration of CM. Lane 4 and 5: The pellet (P) and supernatant (S) after ultracentrifugation of unfiltered CM. Lane 6: Retentate after filteration of CM through a membrane with MWCO of 500 kDa. Lane 7-8: The pellet (P) and supernatant (S) after ultracentrifugation of retentate. Lane 9: Filtrate after after filteration of CM through a membrane with MWCO of 500 kDa.
  • FIG. 17. Fractionation on sucrose gradient density. A sucrose density gradient was prepared by layering 14 sucrose solutions of concentrations from 22.8-60% (w/v) in a SW60Ti centrifuge tube with the most concentrated solution at the bottom of the ultracentrifuge tube. The sample was loaded on top of the gradient and ultracentrifuged for 16.5 hours at 200,000×g, 4° C. in a SW60Ti rotor (Beckman Coulter Inc.). 13 fractions were collected from top to the bottom of the sucrose gradient. The density of each fraction was calculated by weighing a fixed volume of each fraction. The fractions were then analysed by western blot analysis and probed for pyruvate kinase, CD9, CD81 and SOD1. Protein standard molecular weight markers were fractionated on a similar gradient and the distribution of the markers in the different fractions of the sucrose gradient were denoted at the bottom of the figure. a) CM was fractionated, b) CM was treated with lysis buffer before being fractionated on the sucrose gradient.
  • FIG. 18. Trypsinization of CM. CM was digested with trypsin for 0, 0.5, 2, 10 and 20 mins. The partially digested CM was analysed for the presence of CD9 and SOD1.
  • FIG. 19. Analysis of RNA in the CM. (a, b) RNA was extracted from MSCs and MSC-CM. The purified RNA was denatured and separated on a glyoxal agarose gel and urea-PAGE, respectively. (c) Equal volume of CM was treated with PBS, cyclodextrin, lysis buffer or phospholipase A2. The untreated and treated CM were extracted for RNA. The RNA was separated on urea-PAGE. (d) RNA from CM was treated with RNAse III and the treated RNA was separated in parallel with untreated RNA on a urea-PAGE. RNA in the gels was visualized by staining with ethidium bromide.
  • FIG. 20. Density of RNA in the CM. After fractionation of CM, CM pretreated with lysis buffer and RNA MW standards on a sucrose density gradient equilibrium centrifugation as described in FIG. 4, each fraction was extracted for RNA. a) the relative RNA yield for each fraction in each sample was plotted against fraction number. The relative concentration was normalized to the highest RNA concentration in each gradient which was arbitrary set as 100%. b) The RNA extracted from each fraction was separated on a urea-PAGE.
  • FIG. 21. RNA was not in CD81+ exosomes. CD81 immunoprecipitation which also precipitated CD9 was performed as described in FIG. 2. The immunoprecipitate and the supernatant were extracted for RNA and the extracts were separated on a urea-PAGE and visualized by ethidium bromide staining.
  • FIG. 22. Microarray analysis of miRNA in the CM. RNA samples from MSC and the CM were hybridized to microarray chips containing probes for miRNA transcripts listed in Sanger miRBase Release 10.1. The hybridization was performed using two biological replicates of each RNA samples. a) 149 miRNA were detected in MSC and 63 were detected in the CM. Of these, 47 were expressed at similar levels in both MSCs and the CM. 16 were expressed at a detectable level in CM but not in MSC s while 47 were detected in MSCs but not in the CM. b) Relative expression level of guide miRNA to its anti-guide miRNA based on hybridization signal on the microarray chip.
  • FIG. 23. HPLC fractionation of CM and NCM. CM and NCM were fractionated on a HPLC using BioSep 54000, 7.8 mm×30 cm column. The components in CM or NCM were eluted with 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2. The elution mode was isocratic and the run time was 40 minutes. The eluent was monitored with an UV-visible detector set at 220 nm. The % area under each peak was integrated from the UV-visible detector.
    •  DETAILED DESCRIPTION
  • The present invention is based on the demonstration that human ESC-derived mesenchymal stem cells (MSCs) mediate cardioprotective effects through secreted large complexes of ˜50-100 nm in diameter. Such complexes or particles may therefore be used for therapeutic means, including for cardioprotection, in place of the cells themselves.
  • The Examples describe proteomic analysis of these complexes, revealing the presence of exosome-associated proteins e.g. CD81, CD9 and Alix that also co-immunopreciptate, and of membrane and cytosolic proteins that exhibited detergent-sensitive proteolysis consistent with-membrane-bound and membrane-encapsulated proteins respectively.
  • The Examples further demonstrate other properties of these particles or complexes. We show that proteins of such particles or complexes have MW-independent sedimentation densities of 1.016-1.215 g/ml that revert to MW-dependent densities upon treatment with a membrane lysis buffer. The secretion also contains RNAs (<300 nts) in cholesterol-rich lipid vesicles. HPLC fractionation and dynamic light scattering studies further indicate that the only detectable particles in the secretion within hydrodynamic radius (rh) range of 1-1000 nm had a rh of 45-55 nm.
  • These observations together with the presence of membrane lipids e.g. cholesterol sphingomyelin and phosphatidylcholine demonstrate that the cardioprotective complexes in the secretion are exosomes or secreted lipid vesicles.
  • These mesenchymal stem cell particles, complexes or exosomes may be used for a variety of purposes, such as treatment or prevention for cardiac or heart diseases such as ischaemia, cardiac inflammation or heart failure. They may also be used for repair following perfusion injury.
    • Particle
  • We describe a particle which is derivable from a mesenchymal stem cell (MSC).
  • The particle may be derivable from the MSC by any of several means, for example by secretion, budding or dispersal from the MSC. For example, the particle may be produced, exuded, emitted or shed from the MSC. Where the MSC is in cell culture, the particle may be secreted into the cell culture medium.
  • The particle may in particular comprise a vesicle. The particle may comprise an exosome. The particles described here may comprise any one or more of the properties of the exosomes described herein.
  • The particle may comprise vesicles or a flattened sphere limited by a lipid bilayer. The particles may comprise diameters of 40-100 nm. The particles may be formed by inward budding of the endosomal membrane. The particles may have a density of ˜1.13-1.19 g/ml and may float on sucrose gradients. The particles may be enriched in cholesterol and sphingomyelin, and lipid raft markers such as GM1, GM3, flotillin and the src protein kinase Lyn. The particles may comprise one or more proteins present in mesenchymal stem cells or mesenchymal stem cell conditioned medium (MSC-CM), such as a protein characteristic or specific to the MSC or MSC-CM. They may comprise RNA, for example miRNA.
  • We provide a particle which comprises one or more genes or gene products found in MSCs or medium which is conditioned by culture of MSCs. The particle may comprise molecules secreted by the MSC. Such a particle, and combinations of any of the molecules comprised therein, including in particular proteins or polypeptides, may be used to supplement the activity of, or in place of, the MSCs or medium conditioned by the MSCs for the purpose of for example treating or preventing a disease.
  • The particle may comprise a cytosolic protein found in cytoskeleton e.g. tubulin, actin and actin-binding proteins, intracellular membrane fusions and transport e.g. annexins and rab proteins, signal transduction proteins e.g. protein kinases, 14-3-3 and heterotrimeric G proteins, metabolic enzymes e.g. peroxidases, pyruvate and lipid kinases, and enolase-1 and the family of tetraspanins e.g. CD9, CD63, CD81 and CD82. In particular, the particle may comprise one or more tetraspanins. The particles may comprise mRNA and/or microRNA.
  • The term “particle” as used in this document may be taken to mean a discrete entity. The particle may be something that is isolatable from a mesenchymal stem cell (MSC) or mesenchymal stem cell conditioned medium (MSC-CM). The particle may be responsible for at least an activity of the MSC or MSC-CM. The particle may be responsible for, and carry out, substantially most or all of the functions of the MSC or MSC-CM. For example, the particle may be a substitute (or biological substitute) for the MSC or MSC-CM.
  • The particle may be used for any of the therapeutic purposes that the MSC or MSC-CM may be put to use.
  • The particle preferably has at least one property of a mesenchymal stem cell. The particle may have a biological property, such as a biological activity. The particle may have any of the biological activities of an MSC. The particle may for example have a therapeutic or restorative activity of an MSC.
  • The Examples show that media conditioned by MSCs (such as mesenchymal stem cell conditioned media or MSC-CM, as described below) comprise biological activities of MSC and are capable of substituting for the MSCs themselves. The biological property or biological activity of an MSC may therefore correspond to a biological property or activity of an mesenchymal stem cell conditioned medium. Accordingly, the particle may comprise one or more biological properties or activities of a mesenchymal stem cell conditioned medium (MSC-CM).
  • Mesenchymal Stem Cell Conditioned Medium (MSC-CM)
  • The conditioned cell culture medium such as a Mesenchymal Stem Cell Conditioned Medium (MSC-CM) may be obtained by culturing a mesenchymal stem cell (MSC), a descendent thereof or a cell line derived therefrom in a cell culture medium; and isolating the cell culture medium. The mesenchymal stem cell may be produced by a process comprising obtaining a cell by dispersing a embryonic stem (ES) cell colony. The cell, or a descendent thereof, may be propagated in the absence of co-culture in a serum free medium comprising FGF2.
  • Mesenchymal Stem Cell Particle
  • The particle may be produced or isolated in a number of ways. Such a method may comprise isolating the particle from a mesenchymal stem cell (MSC). Such a method may comprise isolating the particle from an mesenchymal stem cell conditioned medium (MSC-CM).
  • The particle may be isolated for example by being separated from non-associated components based on any property of the particle. For example, the particle may be isolated based on molecular weight, size, shape, composition or biological activity.
  • The conditioned medium may be filtered or concentrated or both during, prior to or subsequent to separation. For example, it may be filtered through a membrane, for example one with a size or molecular weight cut-off. It may be subject to tangential force filtration or ultrafiltration.
  • For example, filtration with a membrane of a suitable molecular weight or size cutoff, as described in the Assays for Molecular Weight elsewhere in this document, may be used.
  • The conditioned medium, optionally filtered or concentrated or both, may be subject to further separation means, such as column chromatography. For example, high performance liquid chromatography (HPLC) with various columns may be used. The columns may be size exclusion columns or binding columns.
  • One or more properties or biological activities of the particle may be used to track its activity during fractionation of the mesenchymal stem cell conditioned medium (MSC-CM). As an example, light scattering, refractive index, dynamic light scattering or UV-visible detectors may be used to follow the particles. For example, a therapeutic activity such as cardioprotective activity may be used to track the activity during fractionation.
  • The following paragraphs provide a specific example of how a mesenchymal stem cell particle such as an exosome may be obtained.
  • A mesenchymal stem cell particle may be produced by culturing mesenchymal stem cells in a medium to condition it. The mesenchymal stem cells may comprise HuES9.E1 cells. The medium may comprise DMEM. The DMEM may be such that it does not comprise phenol red. The medium may be supplemented with insulin, transferrin, or selenoprotein (ITS), or any combination thereof. It may comprise FGF2. It may comprise PDGF AB. The concentration of FGF2 may be about 5 ng/ml FGF2. The concentration of PDGF AB may be about 5 ng/ml. The medium may comprise glutamine-penicillin-streptomycin or b-mercaptoethanol, or any combination thereof.
  • The cells may be cultured for about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 days or more, for example 3 days. The conditioned medium may be obtained by separating the cells from the medium. The conditioned medium may be centrifuged, for example at 500 g. it may be concentrated by filtration through a membrane. The membrane may comprise a >1000 kDa membrame. The conditioned medium may be concentrated about 50 times or more.
  • The conditioned medium may be subject to liquid chromatography such as HPLC. The conditioned medium may be separated by size exclusion. Any size exclusion matrix such as Sepharose may be used. As an example, a TSK Guard column SWXL, 6×40 mm or a TSK gel G4000 SWXL, 7.8×300 mm may be employed. The eluent buffer may comprise any physiological medium such as saline. It may comprise 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2. The chromatography system may be equilibrated at a flow rate of 0.5 ml/min. The elution mode may be isocratic. UV absorbance at 220 nm may be used to track the progress of elution. Fractions may be examined for dynamic light scattering (DLS) using a quasi-elastic light scattering (QELS) detector.
  • Fractions which are found to exhibit dynamic light scattering may be retained. For example, a fraction which is produced by the general method as described above, and which elutes with a retention time of 11-13 minutes, such as 12 minutes, is found to exhibit dynamic light scattering. The rh of particles in this peak is about 45-55 nm. Such fractions comprise mesenchymal stem cell particles such as exosomes.
    • Particle Properties
  • The property of a mesenchymal stem cell may comprise a property of a medium conditioned by a mesenchymal stem cell (MSC-CM). Methods of producing such a mesenchymal stem cell conditioned medium are described elsewhere in this document and are illustrated in for Example 1 below.
  • The property may comprise a biological property such as a biological activity. Examples of biological activities include cardioprotection, reduction of oxidative stress and reduction of infarct size.
    • Cardioprotection
  • The particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising cardioprotection The cardioprotection may comprise restoration or maintenance of cardiac function during ischemia and/or reperfusion.
  • Assay for Cardioprotection
  • Cardioprotection may for example be assayed using any one or more of the methods described in Examples 5, 10, 14 and 20.
    • Oxidative Stress
  • The particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising the ability to reduce oxidative stress (or cytoprotection).
  • Assay for Oxidative Stress
  • The reduction of oxidative stress may for example be assayed using an in vitro assay of hydrogen peroxide (H2O2)-induced cell death. In summary, hydrogen peroxide (H2O2)-mediated oxidative stress is induced in human leukemic CEM cells and cell viability is monitored by Trypan blue-exclusion. Human leukemic CEM cells are incubated with particle, conditioned medium or mesenchymal stem cell (with saline as a control) and treated with 50 μM H2O2 to induce oxidative stress. Cell viability is assessed using Trypan Blue exclusion at 12, 24, 36 and 48 hours after H2O2 treatment.
  • The reduction of oxidative stress may further be assayed using an in vivo assay of DNA oxidation. In vivo oxidative stress may also be assayed as follows. Pigs are treated with the particle, conditioned medium or mesenchymal stem cell (with saline as a control). Tissue sections of pig heart are obtained. Nuclear oxidative stress in tissue sections of treated and untreated pigs is quantified by 8-OHdG immunostaining for oxidized DNA. The tissue sections are assayed for intense nuclear staining indicative of DNA oxidation and oxidative stress.
    • Infarct Size
  • The particle may have a property of mesenchymal stem cells and/or mesenchymal stem cell conditioned medium (MSC-CM) comprising the ability to reduce infarct size.
  • Assay for Infarct Size
  • Infarct size may for example be assayed using any one or more of the methods described in Examples 6 and 13.
    • Particle Molecular Weight
  • The particle may have a molecular weight of greater than 100 kDa. It may have a molecular weight of greater than 500 kDa. For example, it may have a molecular weight of greater than 1000 kDa.
  • The molecular weight may be determined by various means. In principle, the molecular weight may be determined by size fractionation and filtration through a membrane with the relevant molecular weight cut-off. The particle size may then be determined by tracking segregation of component proteins with SDS-PAGE or by a biological assay.
  • Assay of Molecular Weight by SDS-PAGE
  • The particle may have a molecular weight of greater than 100 kDa. For example, the particle may be such that most proteins of the particle with less than 100 kDa molecular weight segregate into the greater than 100 kDa molecular weight retentate fraction, when subject to filtration. Similarly, when subjected to filtration with a membrane with a 500 kDa cut off, most proteins of the particle with less than 500 kDa molecular weight may segregate into the greater than 500 kDa molecular weight retentate fraction. This indicates that the particle may have a molecular weight of more than 500 kDa.
  • Assay of Molecular Weight by Biological Activity
  • The particle may have a molecular weight of more than 1000 kDa. For example, the particle may be such that when subject to filtration with a membrane with a molecular weight cutoff of 1000 kDa, the relevant biological activity substantially or predominantly remains in the retentate fraction. Alternatively or in addition, biological activity may be absent in the filtrate fraction. The biological activity may comprise any of the biological activities of the particle described elsewhere in this document.
  • Assay of Molecular Weight by Infarct Size
  • For example, the biological activity may comprise reduction of infarct size, as assayed in any suitable model of myocardia ischemia and reperfusion injury. For example, the biological activity may be assayed in a mouse or pig model, such as described in the Examples.
  • In summary, myocardial ischemia is induced by 30 minutes left coronary artery (LCA) occlusion by suture ligation and reperfusion is initiated by removal of suture. Mice are treated with liquid containing the particles (such as unfractionated MSC-CM), filtrate (such as <100 or 1,000 kD fraction), retentate (such as >1000 kD retentate) or saline intravenously via the tail vein, 5 minutes before reperfusion. 24 hours later, the hearts are excised. Before excision, the Area At Risk (AAR) is determined by religating the LCA and then perfusing Evans blue through the aorta.
  • AAR is defined as the area not stained by the dye and is expressed as a percentage of the left ventricular wall area. Infarct size is assessed 24 hours later using Evans blue and TTC. Where the relative infarct size is significantly reduced in animals treated with mesenchymal stem cell conditioned medium (MSC-CM) and the retentate (such as a >1000 kD) fraction when compared to saline, this indicates that the particle has a molecular weight which is higher than the relevant cutoff of the membrane (e.g., greater than 1000 kDa).
    • Particle Size
  • The particle may have a size of greater than 2 nm. The particle may have a size of greater than 5 nm, 10 nm, 20 nm, 30 nm, 40 nm or 50 nm. The particle may have a size of greater than 100 nm, such as greater than 150 nm. The particle may have a size of substantially 200 nm or greater.
  • The particle or particles may have a range of sizes, such as between 2 nm to 20 nm, 2 nm to 50 nm, 2 nm to 100 nm, 2 nm to 150 nm or 2 nm to 200 nm. The particle or particles may have a size between 20 nm to 50 nm, 20 nm to 100 nm, 20 nm to 150 nm or 20 nm to 200 nm. The particle or particles may have a size between 50 nm to 100 ηm, 50 ηm to 150 nm or 50 nm to 200 nm. The particle or particles may have a size between 100 nm to 150 nm or 100 nm to 200 nm. The particle or particles may have a size between 150 nm to 200 nm.
  • The size may be determined by various means. In principle, the size may be determined by size fractionation and filtration through a membrane with the relevant size cut-off. The particle size may then be determined by tracking segregation of component proteins with SDS-PAGE or by a biological assay.
  • The size may also be determined by electron microscopy, as described in Example 21.
  • The size may comprise a hydrodynamic radius. The hydrodynamic radius of the particle may be below 100 nm. It may be between about 30 nm and about 70 nm. The hydrodynamic radius may be between about 40 nm and about 60 nm, such as between about 45 nm and about 55 nm. The hydrodynamic radius may be about 50 nm.
  • The hydrodynamic radius of the particle may be determined by any suitable means, for example, laser diffraction or dynamic light scattering. An example of a dynamic light scattering method to determine hydrodynamic radius is set out in Example 33 below.
    • Composition
  • The particle may comprise one or more proteins secreted by a mesenchymal stem cell. The particle may comprise one or more proteins present in mesenchymal stem cell conditioned medium (MSC-CM).
  • For example, the particle may comprise 10% or more, 20% or more, 30% or more, 40% or more, 50% or more, 60% or more or 70% or more of these proteins. The particle may comprise substantially about 75% of these proteins. The proteins may be defined by reference to a list of proteins or gene products of a list of genes.
  • Proteins
  • The proteins may be selected from those set out in Table D1 below. Table D1 comprises the following proteins numbered 1 to 250, as well as the “proteins with unidentified functions”, in the paragraphs below:
  • 1. IPI00021428 Actin, alpha skeletal muscle; 2. IPI00414057 Actin alpha 1 skeletal muscle protein; 3. IPI00008603 Actin, aortic smooth muscle; 4. IPI00021439 Actin, cytoplasmic 1; 5. IPI00023006 Actin, alpha cardiac; 6. IPI00021440 Actin, cytoplasmic 2; 7. IPI00025416 Actin, gamma-enteric smooth muscle; 8. IPI00479925 agrin; 9. IPI00015102 CD166 antigen precursor; 10. IPI00007423 Acidic leucine-rich nuclear phosphoprotein 32 family member B; 11. IPI00413331 36 kDa protein; 12. IPI00412577 34 kDa protein; 13. IPI00413506 33 kDa protein; 14. IPI00418169 Hypothetical protein DKFZp686P03159; 15. IPI00003815 Rho GDP-dissociation inhibitor 1; 16. IPI00004656 Beta-2-microglobulin precursor; 17. IPI00218042 Splice Isoform BMP1-5 of Bone morphogenetic protein 1 precursor; 18. IPI00009054 Splice Isoform BMP1-3 of Bone morphogenetic protein 1 precursor; 19. IPI00014021 Splice Isoform BMP1-1 of Bone morphogenetic protein 1 precursor; 20. IPI00218040 Splice Isoform BMP1-4 of Bone morphogenetic protein 1 precursor; 21. IPI00006980 Protein C14orf166; 22. IPI00296165 Complement C1r subcomponent precursor; 23. IPI00152540 OTTHUMP00000016748; 24. IPI00305064 Splice Isoform CD44 of CD44 antigen precursor; 25. IPI00297160 Hypothetical protein DKFZp451 K1918; 26. IPI00293539 Splice Isoform 2 of Cadherin-11 precursor; 27. IPI00304227 Splice Isoform 1 of Cadherin-11 precursor; 28. IPI00386476 Cadherin 11, type 2, isoform 1 preproprotein; 29. IPI00024046 Cadherin-13 precursor;
  • 30. IPI00290085 Neural-cadherin precursor; 31. IPI00029739 Splice Isoform 1 of Complement factor H precursor; 32. IPI00012011 Cofilin, non-muscle isoform; 33. IPI00007257 calsyntenin 1 isoform 2; 34. IPI00218539 Splice Isoform B of Collagen alpha-1(XI) chain precursor; 35. IPI00477350 Collagen, type XI, alpha 1; 36. IPI00329573 Splice Isoform Long of Collagen alpha-1(XII) chain precursor; 37. IPI00221384 Splice Isoform Short of Collagen alpha-1(XII) chain precursor; 38. IPI00400935 Collagen alpha-1(XVI) chain precursor; 39. IPI00297646 Collagen alpha-1(I) chain precursor; 40. IPI00164755 Prepro-alpha2(I) collagen precursor; 41. IPI00304962 Collagen alpha-2(I) chain precursor; 42. IPI00021033 Collagen alpha-1(III) chain precursor; 43. IPI00167087 COL3A1 protein; 44. IPI00021034 Collagen alpha-1(IV) chain precursor; 45. IPI00479324 alpha 2 type IV collagen preproprotein; 46. IPI00306322 Collagen alpha-2(IV) chain precursor; 47. IPI00303313 Collagen alpha-1(V) chain precursor; 48. IPI00477611 184 kDa protein; 49. IPI00293881 COL5A2 protein; 50. IPI00018279 Collagen alpha-3(V) chain precursor; 51. IPI00291136 Collagen alpha-1(VI) chain precursor; 52. IPI00304840 Splice Isoform 2C2 of Collagen alpha-2(VI) chain precursor; 53. IPI00220613 Splice Isoform 2C2A of Collagen alpha-2(VI) chain precursor; 54. IPI00022200 alpha 3 type VI collagen isoform 1 precursor; 55. IPI00072918 alpha 3 type VI collagen isoform 4 precursor; 56. IPI00220701 Splice Isoform 2 of Collagen alpha-3(VI) chain precursor; 57. IPI00072917 alpha 3 type VI collagen isoform 3 precursor; 58. IPI00021828 Cystatin B; 59. IPI00007778 Di-N-acetylchitobiase precursor; 60. IPI00295741 Cathepsin B precursor;
  • 61. IPI00299219 Protein CYR61 precursor; 62. IPI00514900 42 kDa protein; 63. IPI00333770 Similar to Dedicator of cytokinesis protein 10; 64. IPI00478332 Similar to Dedicator of cytokinesis protein 9; 65. IPI00000875 Elongation factor 1-gamma; 66. IPI00465248 Alpha-enolase; 67. IPI00013769 Alpha-enolase, lung specific; 68. IPI00216171 Gamma-enolase; 69. IPI00218803 Splice Isoform B of Fibulin-1 precursor; 70. IPI00296537 Splice Isoform C of Fibulin-1 precursor; 71. IPI00328113 Fibrillin-1 precursor; 72. IPI00019439 fibrillin 2 precursor; 73. IPI00385645 Splice Isoform 2 of Fibroblast growth factor 17 precursor; 74. IPI00216602 Splice Isoform 5 of Fibroblast growth factor receptor 2 precursor; 75. IPI00216604 Splice Isoform 8 of Fibroblast growth factor receptor 2 precursor; 76. IPI00034099 Hypothetical protein FLJ21918; 77. IPI00333541 Filamin-A; 78. IPI00302592 Filamin A, alpha; 79. IPI00339227 Hypothetical protein DKFZp68601166; 80. IPI00414283 Fibronectin precursor (FN) (Cold-insoluble globulin) (CIG). Splice isoform 3; 81. IPI00339225 Splice Isoform 5 of Fibronectin precursor; 82. IPI00339319 Splice Isoform 11 of Fibronectin precursor; 83. IPI00556632 Splice Isoform 12 of Fibronectin precursor; 84. IPI00411462 Hypothetical protein DKFZp686B18150; 85. IPI00029723 Follistatin-related protein 1 precursor; 86. IPI00005401 Polypeptide N-acetylgalactosaminyltransferase 5; 87. IPI00219025 Glutaredoxin-1; 88. IPI00171411 Golgi phosphoprotein 2; 89. IPI00026314 Gelsolin precursor;
  • 90. IPI00219757 Glutathione S-transferase P; 91. IPI00027569 Heterogeneous nuclear ribonucleoprotein C-like 1; 92. IPI00003881 HNRPF protein; 93. IPI00442294 Splice Isoform 1 of Neurotrimin precursor; 94. IPI00003865 Splice Isoform 1 of Heat shock cognate 71 kDa protein; 95. IPI00037070 Splice Isoform 2 of Heat shock cognate 71 kDa protein; 96. IPI00220362 10 kDa heat shock protein, mitochondrial; 97. IPI100024284 Basement membrane-specific heparan sulfate proteoglycan core protein precursor; 98. IPI00297284 Insulin-like growth factor binding protein 2 precursor; 99. IPI00297284 Insulin-like growth factor binding protein 2 precursor; 100. IPI00029236 Insulin-like growth factor binding protein 5 precursor; 101. IPI00029236 Insulin-like growth factor binding protein 5 precursor; 102. IPI00029235 Insulin-like growth factor binding protein 6 precursor; 103. IPI00029235 Insulin-like growth factor binding protein 6 precursor; 104. IPI00016915 Insulin-like growth factor binding protein 7 precursor; 105. IPI00016915 Insulin-like growth factor binding protein 7 precursor; 106. IPI00328163 K-ALPHA-1 protein; 107. IPI00021396 Vascular endothelial growth factor receptor 2 precursor; 108. IPI00298281 Laminin gamma-1 chain precursor; 109. IPI00219219 Galectin-1; 110. IPI00023673 Galectin-3 binding protein precursor; 111. IPI00021405 Splice Isoform A of Lamin-A/C; 112. IPI00216953 Splice Isoform ADelta10 of Lamin-A/C; 113. IPI00180173 PREDICTED: similar to tropomyosin 4; 114. IPI00401614 PREDICTED: similar to FKSG30; 115. IPI00374397 PREDICTED: similar to tropomyosin 4; 116. IPI00374732 PREDICTED: similar to PPIA protein; 117. IPI00402104 PREDICTED: similar to peptidylprolyl isomerase A isoform 1; cyclophilin A; peptidyl-pro; 118. IPI00455415 PREDICTED: similar to Heterogeneous nuclear ribonucleoprotein C-like dJ845O24.4; 119. IPI00454722 PREDICTED: similar to Phosphatidylethanolamine-binding protein; 120. IPI00454852 PREDICTED: similar to Teratocarcinoma-derived growth factor 1;
  • 121. IPI00002802 Protein-lysine 6-oxidase precursor; 122. IPI00410152 latent transforming growth factor beta binding protein 1 isoform LTBP-1L; 123. IPI00220249 Latent transforming growth factor beta-binding protein, isoform 1L precursor; 124. IPI00220249 Latent transforming growth factor beta-binding protein, isoform 1L precursor”; 125. IPI00410152 latent transforming growth factor beta binding protein 1 isoform LTBP-1 L; 126. IPI00020986 Lumican precursor; 127. IPI00291006 Malate dehydrogenase, mitochondrial precursor; 128. IPI00005707 Macrophage mannose receptor 2 precursor; 129. IPI00020501 Myosin-11; 130. IPI00019502 Myosin-9; 131. IPI00604620 Nucleolin; 132. IPI00220740 Splice Isoform 2 of Nucleophosmin; 133. IPI00219446 Phosphatidylethanolamine-binding protein; 134. IPI00299738 Procollagen C-endopeptidase enhancer 1 precursor; 135. IPI00015902 Beta platelet-derived growth factor receptor precursor; 136. IPI00216691 Profilin-1; 137. IPI00169383 Phosphoglycerate kinase 1; 138. IPI00219568 Phosphoglycerate kinase, testis specific; 139. IPI00296180 Urokinase-type plasminogen activator precursor; 140. IPI00215943 Splice Isoform 3 of Plectin 1; 141. IPI00215942 Splice Isoform 2 of Plectin 1; 142. IPI00014898 Splice Isoform 1 of Plectin 1; 143. IPI00398777 plectin 1 isoform 8; 144. IPI00398776 plectin 1 isoform 7; 145. IPI00186711 plectin 1 isoform 6; 146. IPI00420096 plectin 1 isoform 3; 147. IPI00398779 plectin 1 isoform 11; 148. IPI00398778 plectin 1 isoform 10; 149. IPI00398002 plectin 1 isoform 1; 150. IPI00419585 Peptidyl-prolyl cis-trans isomerase A;
  • 151. IPI00472718 peptidylprolyl isomerase A isoform 2; 152. IPI00000874 Peroxiredoxin-1; 153. IPI00024915 Peroxiredoxin-5, mitochondrial precursor; 154. IPI00375306 peroxiredoxin 5 precursor, isoform b; 155. IPI00012503 Splice Isoform Sap-mu-0 of Proactivator polypeptide precursor; 156. IPI00374179 proteasome activator subunit 1 isoform 2; 157. IPI00030154 Proteasome activator complex subunit 1; 158. IPI00168812 PTK7 protein tyrosine kinase 7 isoform d precursor; 159. IPI00419941 PTK7 protein tyrosine kinase 7 isoform a precursor; 160. IPI00003590 Quiescin Q6, isoform a; 161. IPI00015916 Bone-derived growth factor (Fragment); 162. IPI00015916 Bone-derived growth factor; 163. IPI00298289 Splice Isoform 2 of Reticulon-4; 164. IPI00021766 Splice Isoform 1 of Reticulon-4; 165. IPI00013895 Calgizzarin; 166. IPI00010402 Hypothetical protein; 167. IPI00218733 Superoxide dismutase; 168. IPI00014572 SPARC precursor; 169. IPI00005614 Splice Isoform Long of Spectrin beta chain, brain 1; 170. IPI00008780 Stanniocalcin-2 precursor; 171. IPI00301288 SEL-OB protein; 172. IPI00216138 Transgelin; 173. IPI00018219 Transforming growth factor-beta-induced protein ig-h3 precursor; 174. IPI00304865 transforming growth factor, beta receptor III”; 175. IPI00296099 Thrombospondin-1 precursor; 176. IPI00032292 Metalloproteinase inhibitor 1 precursor; 177. IPI00027166 Metalloproteinase inhibitor 2 precursor; 178. IPI00220828 Thymosin beta-4; 179. IPI00180240 thymosin-like 3;
  • 180. IPI00299633 OTTHUMP00000031270 (Fragment); 181. IPI00465028 Triosephosphate isomerase 1 variant (Fragment); 182. IPI00451401 Splice Isoform 2 of Triosephosphate isomerase; 183. IPI00010779 Tropomyosin 4; 184. IPI00216975 Splice Isoform 2 of Tropomyosin alpha-4 chain; 185. IPI00180675 Tubulin alpha-3 chain; 186. IPI00218343 Tubulin alpha-6 chain; 187. IPI00216298 Thioredoxin; 188. IPI00472175 CDNA FLJ46672 fis, clone TRACH3009008, highly similar to Thioredoxin reductase; 189. IPI00450472 Ubiquitin-conjugating enzyme E2I; 190. IPI00018352 Ubiquitin carboxyl-terminal hydrolase isozyme L1; 191. IPI00010207 Ubiquitin-fold modifier 1 precursor; 192. IPI00260630 URB; 193. IPI00021263 14-3-3 protein zeta/delta; 194. IPI00642991 Hypothetical protein DKFZp686F10164; 195. IPI00470919 Hypothetical protein DKFZp686K08164; 196. IPI00719088 collagen, type VI, alpha 1 precursor; 197. IPI00654685 Similar to SPARC precursor; 198. IPI00641961 Collagen, type XII, alpha 1; 199. IPI00645849 Extracellular matrix protein 1; 200. IPI00554786 Thioredoxin reductase 1; 201. IPI00645018 Plasminogen activator, urokinase; 202. IPI00552339 Tissue inhibitor of metalloproteinase 1; 203. IPI00642997 Actin, cytoplasmic 2; 204. IPI00719778 Similar to Annexin A2; 205. IPI00647915 Transgelin 2; 206. IPI00552815 Collagen, type V, alpha 1; 207. IPI00552981CDNA PSEC0266 fis, clone NT2RP3003649, highly similar to Homo sapiens fibulin-1D mRNA; 208. IPI00180776 29 kDa protein; 209. IPI00552416 Filamin A, alpha;
  • 210. IPI00640698 Actin, gamma-enteric smooth muscle; 211. IPI00514530 Actin, alpha 1, skeletal muscle; 212. IPI00556442 Insulin-like growth factor binding protein 2 variant (Fragment); 213. IPI00513782 Gelsolin; 214. IPI00478731 29 kDa protein; 215. IPI00396479 24 kDa protein; 216. IPI00334627 39 kDa protein; 217. IPI00555762 PTK7 protein tyrosine kinase 7 isoform a variant (Fragment); 218. IPI00658202 97 kDa protein; 219. IPI00006273 CYR61 protein; 220. IPI00719405 TMSL6 protein; 221. IPI00658096 Thymosin beta-4; 222. IPI00376163 5 kDa protein; 223. IPI00556217 Fibrillin 1 variant (Fragment); 224. IPI00514817 Similar to Lamin A/C; 225. IPI00644087 Progerin; 226. IPI00655812 Rhabdomyosarcoma antigen MU-RMS-40.12; 227. IPI00604517 Similar to Nucleolin; 228. IPI00444262 CDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin; 229. IPI00412473 Protein; 230. IPI00414489 Protein; 231. IPI00411463 Protein; 232. IPI00556415 Transgelin variant (Fragment); 233. IPI00718825 Calmodulin; 234. IPI00478156 17 kDa protein; 235. IPI00386621 CALM3 protein; 236. IPI00647001 Acidic; 237. IPI00642650 Similar to Stanniocalcin 2 precursor; 238. IPI00641471 Collagen-like protein; 239. IPI00514669 SH3 domain binding glutamic acid-rich protein like 3; 240. IPI00719422 Triosephosphate isomerase (Fragment); 241. IPI00003734 Putative S100 calcium-binding protein H_NH0456N16.1; 242. IPI00029574 11 kDa protein; 243. IPI00641047 Gelsolin; 244. IPI00647556 Gelsolin; 245. IPI00654821 hypothetical protein LOC54845 isoform 1; 246. IPI00647572 Dickkopf related protein-3 precursor; 247. IPI00639879 Similar to Cytokinesis protein sepA; 248. IPI00657746 Similar to Dedicator of cytokinesis protein 8; 249. IPI00555993 Vascular endothelial growth factor receptor 3 variant; 250. IPI00552545 Dedicator of cytokinesis protein 8.
  • Proteins with unidentified functions: IPI00642991 Hypothetical protein DKFZp686F10164; IPI00470919 Hypothetical protein DKFZp686K08164; IPI00654685 Similar to SPARC precursor; IPI00719778 Similar to Annexin A2; IPI00552981CDNA PSEC0266 fis, clone NT2RP3003649, highly similar to Homo sapiens fibulin-1D mRNA; IPI00180776 29 kDa protein; IPI00478731 29 kDa protein; IPI00396479 24 kDa protein; IPI00334627 39 kDa protein; IPI00658202 97 kDa protein; IPI00376163 5 kDa protein; IPI00514817 Similar to Lamin A/C; IPI00644087 Progerin; IPI00655812 Rhabdomyosarcoma antigen MU-RMS-40.12; IPI00604517 Similar to Nucleolin; IPI00444262 CDNA FLJ45706 fis, clone FEBRA2028457, highly similar to Nucleolin; IPI00412473 Protein; IPI00414489 Protein; IPI00411463 Protein; IPI00478156 17 kDa protein; IPI00386621 CALM3 protein; IPI00647001 Acidic; IPI00642650 Similar to Stanniocalcin 2 precursor; IPI00641471 Collagen-like protein; IPI00514669 SH3 domain binding glutamic acid-rich protein like 3; IPI00003734 Putative S100 calcium-binding protein H_NH0456N16.1; IPI00029574 11 kDa protein; IPI00654821 hypothetical protein LOC54845 isoform 1; IPI00647572 Dickkopf related protein-3 precursor; IPI00639879 Similar to Cytokinesis protein sepA; IPI00657746 Similar to Dedicator of cytokinesis protein 8; IPI00555993 Vascular endothelial growth factor receptor 3 variant.
  • Gene Products
  • The proteins may be selected from the gene products of the genes set out in Table D2 below. Table D2 comprises the following genes in the paragraphs below:
  • ACTA1; COL5A2; HSPA8; PSAP; ACTA2; COL5A3; HSPE1; PSME1; ACTB; COL6A1; HSPG2; PTK7; ACTC; COL6A2; IGFBP2; QSCN6; ACTG1; COL6A3; IGFBP5; RTN4; ACTG2; CSTB; IGFBP6; S100A11; AGRN; CTBS; IGFBP7; SH3BGRL3; ALCAM; CTSB; K-ALPHA-1; SOD1; ANP32B; CYR61; KDR; SPARC; ANXA2; DOCK10; LAMC1; SPTBN1; ARHGDIA; DOCK8; LGALS1; STC2; B2M; ECM1; LGALS3BP; SVEP1; BMP1; EEF1G; LMNA; TAGLN; C14orf166; ENO1; LOX; TAGLN2; C1R; ENO1B; LTBP1; TGFBI; CALM1; ENO2; LUM; TGFBR3; CD109; FBLN1; MDH2; THBS1; CD44; FBN1; MRC2; TIMP1; CDH11; FBN2; MYH11; TIMP2; CDH13; FGF17; MYH9; TMSB4X; CDH2; FGFR2; NCL; TMSL3; CFH/HF1; FLJ21918; NPM1; TMSL6; CFL1; FLNA; PBP; TPI1; CLSTN1; FN1; PCOLCE; TPM4; COL11A1; FSTL1; PDGFRB; TUBA3; COL12A1; GALNT5; PFN1; TUBA6; COL16A1; GLRX; PGK1; TXN; COL1A1; GOLPH2; PGK2; TXNRD1; COL1A2; GSN; PLAU; UBE2I; COL3A1; GSTP1; PLEC1; UCHL1; COL4A1; HNRPCL1; PPIA; UFM1; COL4A2; HNRPF; PRDX1; URB; COL5A1; HNT; PRDX5; YWHAZ.
  • 201 Genes in 58 Biological Processes
  • The particle may additionally, or alternatively, comprise any of the gene products of the 201 genes listed below in Table D3. These genes are characterised according to a biological process the gene is involved in.
  • Accordingly, the particle may be employed to affect, control or regulate any of these 58 biological processes.
  • TABLE D3
    Listing of 201 Genes in each of the 58 Biological Processes (Genes of
    Mesenchymal Stem Cell Conditioned Medium (MSC-CM))
    Alcohol Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Angiogenesis
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_10337586-S FGF6 fibroblast growth factor 6
    Biomineral Formation
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_5902810-A BMP1 bone morphogenetic protein 1
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    Blood Vessel Devolopment
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_10337586-S FGF6 fibroblast growth factor 6
    Blood Vessel Morphogenesis
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_10337586-S FGF6 fibroblast growth factor 6
    Bone Remodeling
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_5902810-A BMP1 bone morphogenetic protein 1
    BMP1
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    Carbohydrate Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Cellular Carbohydrate Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Cellular Carbohydrate Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Cellular Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Cellular Macromolecule Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Chemotaxis
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Defense Response
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Development
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_5902810-A BMP1 bone morphogenetic protein 1
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_27437048-A CSF3 colony stimulating factor 3 (granulocyte)
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_24430140-S FBN1 fibrillin 1 (Marfan syndrome)
    GI_4755135-S FBN2 fibrillin 2 (congenital contractural arachnodactyly)
    GI_10337586-S FGF6 fibroblast growth factor 6
    GI_24430216-S IL10 interleukin 10
    GI_28610153-S IL8 interleukin 8
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_4580419-A KITLG KIT ligand
    GI_6006018-S LIF leukemia inhibitory factor (cholinergic differentiation factor)
    GI_7262388-S PCOLCE procollagen C-endopeptidase enhancer
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    GI_10863872-S TGFB1 transforming growth factor, beta 1 (Camurati-Engelmann disease)
    GI_4507470-S TGFBR3 transforming growth factor, beta receptor III (betaglycan, 300 kDa)
    GI_40317625-S THBS1 thrombospondin 1
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_4507508-S TIMP1 TIMP metallopeptidase inhibitor 1
    GI_30172563-S VEGF vascular endothelial growth factor
    Energy Derivation by Oxidation of Organic Compounds
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Exocytosis
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    Fever
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Generation of Precursor Metabolites and Energy
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Glucose Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Glucose Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Glycolysis
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Heat Generation
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Hemopoiesis
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_4580419-A KITLG KIT ligand
    GI_24430216-S IL10 interleukin 10
    Hemopoietic or Lymphoid Organ Development
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_4580419-A KITLG KIT ligand
    GI_24430216-S IL10 interleukin 10
    Hexose Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Hexose Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Immune Response
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Inflammatory Response
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Macromolecule Metabolism
    GI_5902810-A BMP1 bone morphogenetic protein 1
    GI_31542249-S C1R complement component 1, r subcomponent
    GI_22538429-A CTSB cathepsin B
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_33859834-S HGF hepatocyte growth factor (hepapoietin A; scatter factor)
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_13027798-S MMP1 matrix metallopeptidase 1 (interstitial collagenase)
    GI_4505204-S MMP10 matrix metallopeptidase 10 (stromelysin 2)
    GI_13027796-S MMP13 matrix metallopeptidase 13 (collagenase 3)
    GI_13027803-S MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase)
    GI_4826835-S MMP9 matrix metallopeptidase 9 (gelatinase B, 92 kDa gelatinase, 92 kDa type
    IV collagenase)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Macromolecule Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Main Pathways of Carbohydrate Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Monosaccharide Catabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Monosaccharide Metabolism
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Organ Development
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_4580419-A KITLG KIT ligand
    GI_5902810-A BMP1 bone morphogenetic protein 1
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_24430216-S IL10 interleukin 10
    GI_10337586-S FGF6 fibroblast growth factor 6
    Organ Morphogenesis
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_10337586-S FGF6 fibroblast growth factor 6
    Ossification
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_5902810-A BMP1 bone morphogenetic protein 1
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    Phosphate Metabolism
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    Phosphorus Metabolism
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    Response to Abiotic Stimulus
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Response to Biotic Stimulus
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Response to Chemical Stimulus
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Response to External Biotic Stimulus
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Response to External Stimulus
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_27894305-S IL1B interleukin 1, beta
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Response to Pest, Pathogen or Parasite
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Response to Stimulus
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_27894305-S IL1B interleukin 1, beta
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Response to Stress
    GI_27894305-S IL1B interleukin 1, beta
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_27894329-S IL1A interleukin 1, alpha
    Response to Wounding
    GI_27894305-S IL1B interleukin 1, beta
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_27894329-S IL1A interleukin 1, alpha
    Secretion
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    Secretory Pathway
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    Skeletal Development
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_5902810-A BMP1 bone morphogenetic protein 1
    BMP1
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    Taxis
    GI_27262654-A IL16 interleukin 16 (lymphocyte chemoattractant factor)
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_34222286-S CYR61 cysteine-rich, angiogenic inducer, 61
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_28610153-S IL8 interleukin 8
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    Thermoregulation
    GI_27894305-S IL1B interleukin 1, beta
    GI_27894329-S IL1A interleukin 1, alpha
    Tissue Development
    GI_27262662-A CDH11 cadherin 11, type 2, OB-cadherin (osteoblast)
    GI_5902810-A BMP1 bone morphogenetic protein 1
    BMP1
    GI_4507170-S SPARC secreted protein, acidic, cysteine-rich (osteonectin)
    Vasulogenesis
    GI_30172563-S VEGF vascular endothelial growth factor
    Vasculature Development
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_28610153-S IL8 interleukin 8
    GI_42716312-S ANG angiogenin, ribonuclease, RNase A family, 5
    GI_10337586-S FGF6 fibroblast growth factor 6
  • 201 Genes in 30 Pathways
  • The particle may additionally, or alternatively, comprise any of the gene products of the 201 genes listed below in Table D4. These genes are characterised according to a pathway the gene is involved in.
  • Accordingly, the particle may be employed to affect, control or regulate any of these 30 pathways.
  • TABLE D4
    Listing of 201 Genes in Each of the 30 Pathways (Genes of
    Mesenchymal Stem Cell Conditioned Medium (MSC-CM))
    Antigen processing and presentation - Homo sapiens (human)
    GI_22538429-A CTSB cathepsin B
    GI_37704380-S B2M beta-2-microglobulin
    GI_24234685-A HSPA8 heat shock 70 kDa protein 8
    GI_30581139-A PSME1 proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)
    Apoptosis - Homo sapiens (human)
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_28416914-S IL3 interleukin 3 (colony-stimulating factor, multiple)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_27894305-S IL1B interleukin 1, beta
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    Carbon fixation - Homo sapiens (human)
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    Cell Communication - Homo sapiens (human)
    GI_27436944-A LMNA lamin A/C
    GI_5016088-S ACTB actin, beta
    GI_10938011-S ACTC actin, alpha, cardiac muscle
    GI_11038618-S ACTG1 actin, gamma 1
    GI_14719826-S COL1A1 collagen, type I, alpha 1
    GI_21536289-S COL1A2 collagen, type I, alpha 2
    GI_15149480-S COL3A1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal
    dominant)
    GI_45580690-S COL4A1 collagen, type IV, alpha 1
    GI_17986276-S COL4A2 collagen, type IV, alpha 2
    GI_16554578-S COL5A1 collagen, type V, alpha 1
    GI_16554580-S COL5A2 collagen, type V, alpha 2
    GI_15011912-S COL6A1 collagen, type VI, alpha 1
    GI_17402876-A COL6A2 collagen, type VI, alpha 2
    GI_17149810-A COL6A3 collagen, type VI, alpha 3
    GI_18375521-A COL11A1 collagen, type XI, alpha 1
    GI_16933543-A FN1 fibronectin 1
    GI_9845497-S LAMC1 laminin, gamma 1 (formerly LAMB2)
    GI_16554581-S COL5A3 collagen, type V, alpha 3
    GI_40317625-S THBS1 thrombospondin 1
    Citrate cycle (TCA cycle) - Homo sapiens (human)
    GI_4504374-S CFH1/HF1 complement factor H
    GI_21735620-S MDH2 malate dehydrogenase 2, NAD (mitochondrial)
    Complement and coagulation cascades - Homo sapiens (human)
    GI_4505862-S PLAU plasminogen activator, urokinase
    GI_4504374-S CFH1/HF1 complement factor H
    GI_31542249-S C1R complement component 1, r subcomponent
    Cytokine-cytokine receptor interaction - Homo sapiens (human)
    GI_4506832-S CCL1 chemokine (C-C motif) ligand 1
    GI_22538399-S CCL11 chemokine (C-C motif) ligand 11
    GI_34335180-A CCL15 chemokine (C-C motif) ligand 15
    GI_22538800-S CCL16 chemokine (C-C motif) ligand 16
    GI_22538812-S CCL2 chemokine (C-C motif) ligand 2
    GI_22538807-A CCL23 chemokine (C-C motif) ligand 23
    GI_22165426-S CCL24 chemokine (C-C motif) ligand 24
    GI_22547151-S CCL26 chemokine (C-C motif) ligand 26
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_13435401-S CCL7 chemokine (C-C motif) ligand 7
    GI_22538815-S CCL8 chemokine (C-C motif) ligand 8
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_27437048-A CSF3 colony stimulating factor 3 (granulocyte)
    GI_4506856-S CX3CL1 chemokine (C-X3-C motif) ligand 1
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_41872613-S CXCL5 chemokine (C—X—C motif) ligand 5
    GI_4504098-S CXCR3 chemokine (C—X—C motif) receptor 3
    GI_6031163-S EGF epidermal growth factor (beta-urogastrone)
    GI_38455415-S FLT3LG fms-related tyrosine kinase 3 ligand
    GI_33859834-S HGF hepatocyte growth factor (hepapoietin A; scatter factor)
    GI_10835170-S IFNG interferon, gamma
    GI_24430216-S IL10 interleukin 10
    GI_24497437-S IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic
    lymphocyte maturation factor 2, p40)
    GI_26787977-S IL13 interleukin 13
    GI_27894329-S IL1A interleukin 1, alpha
    GI_27894305-S IL1B interleukin 1, beta
    GI_28178860-S IL2 interleukin 2
    GI_28416914-S IL3 interleukin 3 (colony-stimulating factor, multiple)
    GI_10834983-S IL6 interleukin 6 (interferon, beta 2)
    GI_28610152-S IL7 interleukin 7
    GI_28610153-S IL8 interleukin 8
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_4580419-A KITLG KIT ligand
    GI_4557714-S LEP leptin (obesity homolog, mouse)
    GI_6006018-S LIF leukemia inhibitory factor (cholinergic differentiation factor)
    GI_15451785-A PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-
    sis) oncogene homolog)
    GI_15451788-S PDGFRB platelet-derived growth factor receptor, beta polypeptide
    GI_10863872-S TGFB1 transforming growth factor, beta 1 (Camurati-Engelmann disease)
    GI_4507462-S TGFB2 transforming growth factor, beta 2
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_4507508-S TIMP1 TIMP metallopeptidase inhibitor 1
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    GI_22547122-S TNFRSF11B tumor necrosis factor receptor superfamily, member 11b
    (osteoprotegerin)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_4506852-S XCL1 chemokine (C motif) ligand 1
    ECM-receptor interaction - Homo sapiens (human)
    GI_9845497-S LAMC1 laminin, gamma 1 (formerly LAMB2)
    GI_14719826-S COL1A1 collagen, type I, alpha 1
    GI_21536289-S COL1A2 collagen, type I, alpha 2
    GI_15149480-S COL3A1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal
    dominant)
    GI_45580690-S COL4A1 collagen, type IV, alpha 1
    GI_17986276-S COL4A2 collagen, type IV, alpha 2
    GI_16554578-S COL5A1 collagen, type V, alpha 1
    GI_16554580-S COL5A2 collagen, type V, alpha 2
    GI_15011912-S COL6A1 collagen, type VI, alpha 1
    GI_17402876-A COL6A2 collagen, type VI, alpha 2
    GI_17149810-A COL6A3 collagen, type VI, alpha 3
    GI_18375521-A COL11A1 collagen, type XI, alpha 1
    GI_16554581-S COL5A3 collagen, type V, alpha 3
    GI_16933543-A FN1 fibronectin 1
    GI_40317625-S THBS1 thrombospondin 1
    GI_7427516-S HSPG2 heparan sulfate proteoglycan 2 (perlecan)
    GI_21361192-S CD44 CD44 antigen (homing function and Indian blood group system)
    Epithelial cell signaling in Helicobacter pylori infection - Homo sapiens (human)
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_4504152-S CXCL1 chemokine (C—X—C motif) ligand 1 (melanoma growth stimulating
    activity, alpha)
    GI_28610153-S IL8 interleukin 8
    Fc epsilon RI signaling pathway - Homo sapiens (human)
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    GI_26787977-S IL13 interleukin 13
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_28416914-S IL3 interleukin 3 (colony-stimulating factor, multiple)
    Focal adhesion - Homo sapiens (human)
    GI_5016088-S ACTB actin, beta
    GI_10938011-S ACTC actin, alpha, cardiac muscle
    GI_11038618-S ACTG1 actin, gamma 1
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_18375521-A COL11A1 collagen, type XI, alpha 1
    GI_14719826-S COL1A1 collagen, type I, alpha 1
    GI_21536289-S COL1A2 collagen, type I, alpha 2
    GI_15149480-S COL3A1 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal
    dominant)
    GI_45580690-S COL4A1 collagen, type IV, alpha 1
    GI_17986276-S COL4A2 collagen, type IV, alpha 2
    GI_16554578-S COL5A1 collagen, type V, alpha 1
    GI_16554580-S COL5A2 collagen, type V, alpha 2
    GI_16554581-S COL5A3 collagen, type V, alpha 3
    GI_15011912-S COL6A1 collagen, type VI, alpha 1
    GI_17402876-A COL6A2 collagen, type VI, alpha 2
    GI_17149810-A COL6A3 collagen, type VI, alpha 3
    GI_6031163-S EGF epidermal growth factor (beta-urogastrone)
    GI_4503744-S FLNA filamin A, alpha (actin binding protein 280)
    GI_16933543-A FN1 fibronectin 1
    GI_33859834-S HGF hepatocyte growth factor (hepapoietin A; scatter factor)
    GI_19923111-S IGF1 insulin-like growth factor 1 (somatomedin C)
    GI_10834983-S IL6 interleukin 6 (interferon, beta 2)
    GI_11321596-S KDR kinase insert domain receptor (a type III receptor tyrosine kinase)
    GI_9845497-S LAMC1 laminin, gamma 1 (formerly LAMB2)
    GI_15451785-A PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-
    sis) oncogene homolog)
    GI_15451788-S PDGFRB platelet-derived growth factor receptor, beta polypeptide
    GI_40317625-S THBS1 thrombospondin 1
    GI_30172563-S VEGF vascular endothelial growth factor
    Gap junction - Homo sapiens (human)
    GI_5174476-S K-ALPHA-1 tubulin, alpha, ubiquitous
    GI_17986282-S TUBA3 tubulin, alpha 3
    GI_31880337-S TUBA6 tubulin, alpha 6
    GI_15451788-S PDGFRB platelet-derived growth factor receptor, beta polypeptide
    GI_6031163-S EGF epidermal growth factor (beta-urogastrone)
    GI_15451785-A PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-
    sis) oncogene homolog)
    Glycolysis or Gluconeogenesis - Homo sapiens (human)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    GI_22095338-S PGK1 phosphoglycerate kinase 1
    GI_31543396-S PGK2 phosphoglycerate kinase 2
    Hematopoietic cell lineage - Homo sapiens (human)
    GI_21361192-S CD44 CD44 antigen (homing function and Indian blood group system)
    GI_4503744-S FLNA filamin A, alpha (actin binding protein 280)
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_4507508-S TIMP1 TIMP metallopeptidase inhibitor 1
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    GI_27262662-A CSF1 colony stimulating factor 1 (macrophage)
    GI_27437048-A CSF3 colony stimulating factor 3 (granulocyte)
    GI_38455415-S FLT3LG fms-related tyrosine kinase 3 ligand
    GI_10834983-S IL6 interleukin 6 (interferon, beta 2)
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_27894329-S IL1A interleukin 1, alpha
    GI_27894305-S IL1B interleukin 1, beta
    GI_28416914-S IL3 interleukin 3 (colony-stimulating factor, multiple)
    GI_28610152-S IL7 interleukin 7
    GI_4580419-A KITLG KIT ligand
    Inositol metabolism - Homo sapiens (human)
    GI_26024330-S TPI1 triosephosphate isomerase 1
    Insulin signaling pathway - Homo sapiens (human)
    GI_31377794-S CALM1 calmodulin 1 (phosphorylase kinase, delta)
    GI_41281560-S CLSTN1 calsyntenin 1
    Jak-STAT signaling pathway - Homo sapiens (human)
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_27437048-A CSF3 colony stimulating factor 3 (granulocyte)
    GI_10835170-S IFNG interferon, gamma
    GI_24430216-S IL10 interleukin 10
    GI_24497437-S IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic
    lymphocyte maturation factor 2, p40)
    GI_26787977-S IL13 interleukin 13
    GI_28178860-S IL2 interleukin 2
    GI_28416914-S IL3 interleukin 3 (colony-stimulating factor, multiple)
    GI_10834983-S IL6 interleukin 6 (interferon, beta 2)
    GI_28610152-S IL7 interleukin 7
    GI_4557714-S LEP leptin (obesity homolog, mouse)
    GI_6006018-S LIF leukemia inhibitory factor (cholinergic differentiation factor)
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_4507508-S TIMP1 TIMP metallopeptidase inhibitor 1
    Leukocyte transendothelial migration - Homo sapiens (human)
    GI_4826835-S MMP9 matrix metallopeptidase 9 (gelatinase B, 92 kDa gelatinase, 92 kDa type
    IV collagenase)
    GI_5453576-S CXCL13 chemokine (C—X—C motif) ligand 13 (B-cell chemoattractant)
    GI_28610153-S IL8 interleukin 8
    GI_40316922-I CXCL12 chemokine (C—X—C motif) ligand 12 (stromal cell-derived factor 1)
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_5016088-S ACTB actin, beta
    GI_10938011-S ACTC actin, alpha, cardiac muscle
    GI_11038618-S ACTG1 actin, gamma 1
    MAPK signaling pathway - Homo sapiens (human)
    GI_34106709-A BDNF brain-derived neurotrophic factor
    GI_6031163-S EGF epidermal growth factor (beta-urogastrone)
    GI_4503692-S FGF17 fibroblast growth factor 17
    GI_4503700-S FGF4 fibroblast growth factor 4 (heparin secretory transforming protein 1,
    Kaposi sarcoma oncogene)
    GI_10337586-S FGF6 fibroblast growth factor 6
    GI_15147344-S FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
    GI_4503706-S FGF9 fibroblast growth factor 9 (glia-activating factor)
    GI_13186266-A FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase,
    keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon
    syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)
    GI_4503744-S FLNA filamin A, alpha (actin binding protein 280)
    GI_40549401-A GDNF glial cell derived neurotrophic factor
    GI_24234685-A HSPA8 heat shock 70 kDa protein 8
    GI_27894329-S IL1A interleukin 1, alpha
    GI_27894305-S IL1B interleukin 1, beta
    GI_15451785-A PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-
    sis) oncogene homolog)
    GI_15451788-S PDGFRB platelet-derived growth factor receptor, beta polypeptide
    GI_10863872-S TGFB1 transforming growth factor, beta 1 (Camurati-Engelmann disease)
    GI_4507462-S TGFB2 transforming growth factor, beta 2
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    Methane metabolism - Homo sapiens (human)
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_32455261-A PRDX5 peroxiredoxin 5
    mTOR signaling pathway - Homo sapiens (human)
    GI_30172563-S VEGF vascular endothelial growth factor
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_19923111-S IGF1 insulin-like growth factor 1 (somatomedin C)
    Phenylalanine, tyrosine and tryptophan biosynthesis - Homo sapiens (human)
    GI_16507965-S ENO1 enolase 1, (alpha)
    GI_16507966-S ENO2 enolase 2 (gamma, neuronal)
    Phenylalanine metabolism - Homo sapiens (human)
    GI_4505184-S MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor)
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_32455261-A PRDX5 peroxiredoxin 5
    Regulation of actin cytoskeleton - Homo sapiens (human)
    GI_5016088-S ACTB actin, beta
    GI_10938011-S ACTC actin, alpha, cardiac muscle
    GI_11038618-S ACTG1 actin, gamma 1
    GI_5031634-S CFL1 cofilin 1 (non-muscle)
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_6031163-S EGF epidermal growth factor (beta-urogastrone)
    GI_4503692-S FGF17 fibroblast growth factor 17
    GI_4503700-S FGF4 fibroblast growth factor 4 (heparin secretory transforming protein 1,
    Kaposi sarcoma oncogene)
    GI_10337586-S FGF6 fibroblast growth factor 6
    GI_15147344-S FGF7 fibroblast growth factor 7 (keratinocyte growth factor)
    GI_4503706-S FGF9 fibroblast growth factor 9 (glia-activating factor)
    GI_13186266-A FGFR2 fibroblast growth factor receptor 2 (bacteria-expressed kinase,
    keratinocyte growth factor receptor, craniofacial dysostosis 1, Crouzon
    syndrome, Pfeiffer syndrome, Jackson-Weiss syndrome)
    GI_16933543-A FN1 fibronectin 1
    GI_38044287-A GSN gelsolin (amyloidosis, Finnish type)
    GI_22507396-S MYH9 myosin, heavy polypeptide 9, non-muscle
    GI_15451785-A PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-
    sis) oncogene homolog)
    GI_15451788-S PDGFRB platelet-derived growth factor receptor, beta polypeptide
    GI_16753213-S PFN1 profilin 1
    GI_34328943-S TMSB4X thymosin, beta 4, X-linked
    GI_34013529-S TMSL3 thymosin-like 3
    Stilbene, coumarine and lignin biosynthesis - Homo sapiens (human)
    GI_40805871-S THPO thrombopoietin (myeloproliferative leukemia virus oncogene ligand,
    megakaryocyte growth and development factor)
    GI_32455261-A PRDX5 peroxiredoxin 5
    T cell receptor signaling pathway - Homo sapiens (human)
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    GI_27437029-S CSF2 colony stimulating factor 2 (granulocyte-macrophage)
    GI_10835170-S IFNG interferon, gamma
    GI_24430216-S IL10 interleukin 10
    GI_28178860-S IL2 interleukin 2
    GI_41281560-S CLSTN1 calsyntenin 1
    TGF-beta signaling pathway - Homo sapiens (human)
    GI_4557730-S LTBP1 latent transforming growth factor beta binding protein 1
    GI_40317625-S THBS1 thrombospondin 1
    GI_10863872-S TGFB1 transforming growth factor, beta 1 (Camurati-Engelmann disease)
    GI_4507462-S TGFB2 transforming growth factor, beta 2
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    GI_10835170-S IFNG interferon, gamma
    Tight junction - Homo sapiens (human)
    GI_5016088-S ACTB actin, beta
    GI_10938011-S ACTC actin, alpha, cardiac muscle
    GI_11038618-S ACTG1 actin, gamma 1
    GI_22507396-S MYH9 myosin, heavy polypeptide 9, non-muscle
    Toll-like receptor signaling pathway - Homo sapiens (human)
    GI_14790145-S CXCL11 chemokine (C—X—C motif) ligand 11
    GI_28610153-S IL8 interleukin 8
    GI_24497437-S IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic
    lymphocyte maturation factor 2, p40)
    GI_27894305-S IL1B interleukin 1, beta
    GI_41281560-S CLSTN1 calsyntenin 1
    GI_10834983-S IL6 interleukin 6 (interferon, beta 2)
    GI_22538813-S CCL5 chemokine (C-C motif) ligand 5
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
    Type I diabetes mellitus - Homo sapiens (human)
    GI_24497437-S IL12B interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic
    lymphocyte maturation factor 2, p40)
    GI_28178860-S IL2 interleukin 2
    GI_10835170-S IFNG interferon, gamma
    GI_27894329-S IL1A interleukin 1, alpha
    GI_27894305-S IL1B interleukin 1, beta
    GI_25952110-S TNF tumor necrosis factor (TNF superfamily, member 2)
  • 593 Genes and 794 Gene Products
  • The particle may additionally, or alternatively, comprise any of the gene products of the 593 genes and/or 794 gene products listed below in Table D5.
  • Accordingly, the particle may be employed to affect, control or regulate any of the biological processes or pathways the genes or gene products are involved in.
  • TABLE D5
    Total 593 unique gene products: set 1-4 (3 of 4 & 4 of 4)
    without common genes in 201 list
    02-Sep CAND1 DDX17 H2AFY KRTHB4 PCBP2 QARS STC1
    07-Sep CAP1 DES HADH LAMA4 PCDH18 QPCT STIP1
    AARS CAP2 DLD HARS LAMB1 PCDHGB6 RAB11B SULF1
    ACAA2 CAPG DNAJC3 HARS2 LANCL1 PCK2 RAB1A SYNCRIP
    ACAT2 CAPN1 DPP3 hCG_1641617 LAP3 PCMT1 RAB6A TALDO1
    ACO1 CAPN2 DPYSL2 hCG_2023776 LASP1 PCNA RAC1 TARS
    ACTN1 CAPZA1 DPYSL3 HEXA LDHA PDCD6IP RAN TCN2
    ACTN2 CAPZA2 DSTN HEXB LDHAL6B PDGFC RANBP5 TCP1
    ACTN3 CAPZB DYNLL1 HIBCH LDHB PDIA3 RARRES2 TFP1
    ACTN4 CARS ECHS1 HINT1 LEPRE1 PDIA4 RARS THBS2
    ACTR1A CBR1 EEF1A1 HIST1H4 LGALS3 PDIA6 RBMX THOP1
    ACTR1B CBR3 EEF1A2 HIST1H4A LOC196463 PDLIM1 RHOA THY1
    ACTR2 CCBL2 EEF1B2 HIST1H4B LOC283523 PDLIM5 RNASE4 TKT
    ACTR3 CCDC19 EEF2 HIST1H4C LOC347701 PDLIM7 RNH1 TLN1
    ACTR3B CCT2 EFEMP2 HIST1H4D LOC646821 PEPD RNPEP TMOD2
    ADAM9 CCT3 EIF2S3 HIST1H4E LOC649125 PFN2 RPL10A TMOD3
    ADSL CCT4 EIF3S9 HIST1H4F LOC653214 PGCP RPL11 TNC
    ADSS CCT5 EIF4A1 HIST1H4H LOC654188 PGD RPL12 TNPO1
    AEBP1 CCT6A EIF4A2 HIST1H4I LOC728378 PGLS RPL14 TP53I3
    AGA CCT7 EMILIN1 HIST1H4J LOXL2 PGM1 RPL18 TPM1
    AHCY CCT8 ENO3 HIST1H4K LRP1 PGRMC2 RPL22 TPM2
    AK1 CD248 EPPK1 HIST1H4L LTA4H PHGDH RPL30 TPM3
    AK2 CD59 EPRS HIST2H2AA3 LTB4DH PHPT1 RPL5 TRAP1
    AKR1A1 CD81 ESD HIST2H2AA4 LTBP2 PICALM RPL7 TRHDE
    AKR1B1 CD9 ETF1 HIST2H4A M6PRBP1 PKM2 RPLP0 TROVE2
    ALDH2 CDC37 ETFB HIST2H4B MACF1 PLEKHC1 RPLP1 TSKU
    ALDH7A1 CDC42 ETHE1 HIST4H4 MAP1B PLOD1 RPLP2 TUBA1A
    ALDOA CFL2 EXT1 HLA-A MAPK1 PLOD2 RPS10 TUBA8
    ALDOC CHID1 FAH HLA-B MAPRE1 PLOD3 RPS15A TUBB
    ANXA1 CLEC11A FAHD1 HMX1 MAT2A PLS1 RPS16 TUBB2C
    ANXA5 CLIC1 FAM129B HNRPA1 MAT2B PLS3 RPS19 TUBB3
    ANXA6 CLIC4 FAM3C HNRPA1L-2 MCTS1 PLSCR3 RPS2 TUBB4
    AP1B1 CLTC FAM49B HNRPA2B1 MDH1 POSTN RPS20 TUBB6
    AP1S1 CLTCL1 FAM62A HNRPC MFAP4 PPCS RPS23 TUBB8
    AP2A1 CLU FBLN5 HNRPD MGAT5 PPIB RPS3 TWF1
    AP2A2 CMPK FDPS HNRPDL MMP14 PPP2R1A RPS4X TXNL5
    AP2B1 CNDP2 FH HNRPH2 MMP2 PPP2R4 RPS5 UBE1
    AP3B1 CNN2 FKBP10 HNRPK MRLC2 PPP5C RPS7 UBE2L3
    APEX1 CNN3 FKBP1A HNRPL MSN PPP6C RPS8 UBE2N
    API5 COL18A1 FKBP3 HNRPR MTAP PRDX2 RPS9 UBE2V1
    APOA1BP COL2A1 FLNB HNRPU MTPN PRDX3 RPSA UBE3B
    APOE COL4A2 FLNC HSP90AB1 MVP PRDX4 RSU1 UCHL3
    APP COL5A1 FLRT2 HSP90B1 MXRA5 PRDX6 S100A16 UGDH
    APRT COL5A2 FLT1 HSPA1A MXRA8 PRG1 SARS UGP2
    ARCN1 COL6A2 FSCN1 HSPA1B MYH14 PRKACA SDC4 UROD
    ARHGAP1 COL7A1 FSTL5 HSPA1L MYL6 PRKCSH SDCBP USP14
    ARPC1A COL7A1 FTL HSPA4 NAGK PRNP SEC22B USP5
    ARPC1B COL7A1 G6PD HSPA5 NANS PROCR SEC23A VARS
    ARPC2 COL7A1 GALNT2 HSPA6 NARS PROSC SEC31A VASN
    ARPC3 COPA GANAB HSPB1 NEDD8 PRSS23 SEMA3C VAT1
    ARPC4 COPG GAPDH HSPD1 NEFM PRSS3 SEMA7A VCL
    ARTS-1 COPS3 GARS HSPH1 NIT2 PSAT1 SERPINB1 VCP
    ATIC COPS4 GAS6 HTRA1 NME1 PSMA1 SERPINB6 VIL2
    ATP5B COPS8 GBA IDH1 NPC2 PSMA2 SERPINE1 VIM
    ATP6AP1 CORO1B GBE1 IGFBP3 NPEPPS PSMA3 SERPINE2 VPS26A
    CORO1C GDF15 IGKC NQO1 PSMA6 SERPINF1 VTN VPS35
    COTL1 GDI1 ILF2 NRP1 PSMA7 SERPINH1 WARS VTN
    CRIP2 GDI2 ILF3 NRP2 PSMB1 SERPINI2 WDR1 WARS
    CS GLO1 INHBA NT5E PSMB2 SFRP1 WNT5A WDR1
    BASP1 CSE1L GLT8D3 IQGAP1 NUCB1 PSMB3 SIL1 WNT5A
    BAT1 CSRP1 GLUD1 ISOC1 OLFML3 PSMB4 SLC1A5 WNT5B
    BBS1 CSRP2 GM2A ITGA2 P4HA1 PSMB5 SLC3A2 XPO1
    BCAT1 CST3 GNPDA1 ITGB4BP P4HB PSMD11 SND1 YKT6
    BGN CTGF GNPNAT1 KPNB1 PABPC1 PSMD13 SNRPD1 YWHAB
    BLVRA CTHRC1 GOT1 KRT1 PABPC4 PSMD5 SNRPE YWHAE
    BPNT1 CTSD GOT2 KRT14 PAFAH1B1 PSMD6 SPOCK YWHAG
    BTD CTSZ GPC1 KRT2 PAFAH1B2 PSMD7 SPTAN1 YWHAH
    C14orf141 CYCS GPI KRT27 PAFAH1B3 PSME2 SPTBN4 YWHAQ
    C19orf10 D4ST1 GREM1 KRT4 PAICS PTBP1 SRP9
    C1orf58 DAG1 GRHPR KRT5 PAM PTPRCAP SRPX
    C1orf78 DCI GSR KRT6L PAPPA PTX3 SRPX2
    C1QBP DCN GSS KRT7 PARK7 PURA SSB
    C1S DDAH2 GSTK1 KRT75 PARP1 PXDN ST13
    C21orf33 DDB1 GSTO1 KRT77 PARVA PYCR1 ST6GAL2
    CALR DDT GTPBP9 KRT9 PCBP1 PYGB STAT1
    593 Additional Proteins in Mesenchymal Stem Cell Conditioned Medium (MSC-CM)
    • Exosome
  • The particle may in particular comprise a vesicle. The particle may comprise an exosome.
  • The Examples describe the isolation of the active component in the secretion that confers cardioprotection against the reperfusion injury. The active component may comprise an exosome secreted by the mesenchymal stem cells (MSCs).
  • Exosomes are small membrane vesicles formed in late endocytic compartments (multivesicular bodies) first described to be secreted by reticulocytes in 198321 and subsequently found to be secreted by many cells types including various haematopoietic cells, tumours of haematopoietic or non-haematopoietic origin and epithelial cells22. They are distinct entities from the more recently described ‘ribonuclease complex’ also named exosome23.
  • Exosomes may be defined by morphological and biochemical parameters (see reviews22,24-35). Accordingly, the particles described here may comprise one or more of these morphological or biochemical parameters.
  • Exosomes are classically defined as “saucer-like” vesicles or a flattened sphere limited by a lipid bilayer with diameters of 40-100 nm and are formed by inward budding of the endosomal membrane. Like all lipid vesicles and unlike protein aggregates or nucleosomal fragments that are released by apoptotic cells, exosomes have a density of ˜1.13-1.19 g/ml and float on sucrose gradients. Exosomes are enriched in cholesterol and sphingomyelin, and lipid raft markers such as GM1, GM3, flotillin and the src protein kinase Lyn suggesting that their membranes are enriched in lipid rafts.
  • The molecular composition of exosomes from different cell types and of different species has been examined. In general, exosomes contain ubiquitous proteins that appear to be common to all exosomes and proteins that are cell-type specific. Also, proteins in exosomes from the same cell-type but of different species are highly conserved. The ubiquitous exosome-associated proteins include cytosolic proteins found in cytoskeleton e.g. tubulin, actin and actin-binding proteins, intracellular membrane fusions and transport e.g. annexins and rab proteins, signal transduction proteins e.g. protein kinases, 14-3-3 and heterotrimeric G proteins, metabolic enzymes e.g. peroxidases, pyruvate and lipid kinases, and enolase-1 and the family of tetraspanins e.g. CD9, CD63, CD81 and CD82. The tetraspannins are highly enriched in exosomes and are known to be involved in the organization of large molecular complexes and membrane subdomains.
  • Examples of cell-type specific proteins in exosomes are MHC class II molecules in exosomes from MHC class II-expressing cells, CD86 in dendritic cell-derived exosomes, T-cell receptors on T-cell-derived exosomes etc. Notably, exosomes do not contain proteins of nuclear, mitochondrial, endoplasmic-reticulum or Golgi-apparatus origin. Also, highly abundant plasma membrane proteins are absent in exosomes suggesting that they are not simply fragments of the plasma membrane. Many of the reported ubiquitous exosome-associated proteins are also present in the proteomic profile of the hESC-MSC secretion.
  • Exosomes are also known to contain mRNA and microRNA, which can be delivered to another cell, and can be functional in this new location36. The physiological functions of exosome remain poorly defined. It is thought to help eradicate obsolete proteins, recycle proteins, mediate tramission of infectious particles such as prions and viruses, induce complement resistance, facilitate immune cell-cell communication and transmit cell signaling1,22,25-28,37-40. Exosomes have been used in immunotherapy for treatment of cancer34
  • Uses of Particles from Mesenchymal Stem Cells
  • The particle may be used as a substitute for an MSC or MSC-CM, as described above In particular, the particle may be used for any of the therapeutic purposes that MSCs or MSC-CMs are currently being used, or in the future may be used.
  • It will be evident that the methods and compositions described here enable the production of particles from mesenchymal stem cells. Thus, any uses of mesenchymal stem cells will equally attach to particles from mesenchymal stem cells.
  • Mesenchymal stem cells and differentiated cells produced by the methods and compositions described here may be used for, or for the preparation of a pharmaceutical composition for, the treatment of a disease. Such disease may comprise a disease treatable by regenerative therapy, including cardiac failure, bone marrow disease, skin disease, burns, degenerative disease such as diabetes, Alzheimer's disease, Parkinson's disease, etc and cancer. Accordingly, particles from MSCs may be used to treat such diseases.
  • Particles from mesenchymal stem cells such as those made according to the methods and compositions described here may be used for a variety of commercially important research, diagnostic, and therapeutic purposes.
  • The particles from mesenchymal stem cells may in particular be used for the preparation of a pharmaceutical composition for the treatment of disease. Such disease may comprise a disease treatable by regenerative therapy, including cardiac failure, bone marrow disease, skin disease, burns, degenerative disease such as diabetes, Alzheimer's disease, Parkinson's disease, etc and cancer.
  • Mesenchymal stem cells made by the methods and compositions described here have similar or identical properties to bone marrow derived mesenchymal stem cells (BM-MSCs). Therefore, the mesenchymal stem cells, and any differentiated cells made from these, as well as particles derived therefrom, may be used in any of the applications for which BM-MSCs are known to be used, or in which it is possible for them to be used.
  • Diseases Treatable by Particles from Mesenchymal Stem Cells
  • Analysis of the proteome of MSCs shows that the proteins expressed are involved in three biological processes: metabolism, defense response, and tissue differentiation including vascularization, hematopoiesis and skeletal development. Accordingly, the particles from MSCs described here may be used to treat diseases which these functions may have a role in, or whose repair or treatment involves any one or more of these biological processes. Similarly, the proteins expressed by the MSCs, singly or in combination, preferably in the form of particles as described here, may be used to supplement the activity of, or in place of, the MSCs, or media conditioned by the MSCs, for the purpose of for example treating or preventing such diseases.
  • The 201 gene products expressed by the MSCs are shown to activate important signalling pathways in cardiovascular biology, bone development and hematopoiesis such as Jak-STAT, MAPK, Toll-like receptor, TGF-beta signalling and mTOR signaling pathways. Accordingly, the particles from the MSCs, etc, may be used to prevent or treat a disease in which any of these signalling pathways is involved, or whose etiology involves one or more defects in any one or more of these signalling pathways.
  • Accordingly, such particles may be used to treat cardiac failure, bone marrow disease, skin disease, burns and degenerative diseases such as diabetes, Alzheimer's disease, Parkinson's disease and cancer.
  • Such particles may also be used to treat myocardial infarction, a cutaneous wound, a dermatologic disorder, a dermatological lesion, dermatitis, psoriasis, condyloma, verruca, hemangioma, keloid, skin cancer, atopic dermatitis, Behcet disease, chronic granulomatous disease, cutaneous T cell lymphoma, ulceration, a pathological condition characterised by initial injury inducing inflammation and immune dysregulation leading to chronic tissue remodeling including fibrosis and loss of function, renal ischemic injury, cystic fibrosis, sinusitis and rhinitis or an orthopedic disease.
  • The particles may be used to aid wound healing, scar reduction, bone formation, a bone graft or bone marrow transplantation in an individual.
  • Unless the context dictates otherwise, the term “conditioned medium” should be taken to include not only cell culture medium exposed to MSCs as well as such a composition comprising one or more, preferably substantially all, the polypeptides which are present in the conditioned medium.
  • The particles may also be used as sources for any of the proteins secreted or expressed by the MSCs. We therefore provide for a method of producing a polypeptide as shown in any of Tables D1 to D5, the method comprising obtaining a particle as described, and isolating the polypeptide from the particle.
    • Heart Disease
  • The mesenchymal stem cell particle methods and compositions described here may be used for treatment or prevention of heart disease.
  • Heart disease is an umbrella term for a variety for different diseases affecting the heart. As of 2007, it is the leading cause of death in the United States, England, Canada and Wales, killing one person every 34 seconds in the United States alone. Heart disease includes any of the following.
  • Coronary Heart Disease
  • Coronary artery disease is a disease of the artery caused by the accumulation of atheromatous plaques within the walls of the arteries that supply the myocardium. Angina pectoris (chest pain) and myocardial infarction (heart attack) are symptoms of and conditions caused by coronary heart disease. Over 459,000 Americans die of coronary heart disease every year. In the United Kingdom, 101,000 deaths annually are due to coronary heart disease.
  • Cardiomyopathy
  • Cardiomyopathy is the deterioration of the function of the myocardium (i.e., the actual heart muscle) for any reason. People with cardiomyopathy are often at risk of arrhythmia and/or sudden cardiac death. Extrinsic cardiomyopathies—cardiomyopathies where the primary pathology is outside the myocardium itself comprise the majority of cardiomyopathies. By far the most common cause of a cardiomyopathy is ischemia.
  • The World Health Organization includes as specific cardiomyopathies: Alcoholic cardiomyopathy, coronary artery disease, congenital heart disease, nutritional diseases affecting the heart, ischemic (or ischaemic) cardiomyopathy, hypertensive cardiomyopathy, valvular cardiomyopathy, inflammatory cardiomyopathy.
  • Also included are:
  • Cardiomyopathy secondary to a systemic metabolic disease
  • Intrinsic cardiomyopathies (weakness in the muscle of the heart that is not due to an identifiable external cause)
  • Dilated cardiomyopathy (DCM, the most common form, and one of the leading indications for heart transplantation. In DCM the heart (especially the left ventricle) is enlarged and the pumping function is diminished)
  • Hypertrophic cardiomyopathy (HCM or HOCM, a genetic disorder caused by various mutations in genes encoding sarcomeric proteins. In HCM the heart muscle is thickened, which can obstruct blood flow and prevent the heart from functioning properly),
  • Arrhythmogenic right ventricular cardiomyopathy (ARVC, which arises from an electrical disturbance of the heart in which heart muscle is replaced by fibrous scar tissue. The right ventricle is generally most affected)
  • Restrictive cardiomyopathy (RCM, which is the least common cardiomyopathy. The walls of the ventricles are stiff, but may not be thickened, and resist the normal filling of the heart with blood).
  • Noncompaction Cardiomyopathy—the left ventricle wall has failed to properly grow from birth and such has a spongy appearance when viewed during an echocardiogram.
  • Cardiovascular Disease
  • Cardiovascular disease is any of a number of specific diseases that affect the heart itself and/or the blood vessel system, especially the veins and arteries leading to and from the heart. Research on disease dimorphism suggests that women who suffer with cardiovascular disease usually suffer from forms that affect the blood vessels while men usually suffer from forms that affect the heart muscle itself. Known or associated causes of cardiovascular disease include diabetes mellitus, hypertension, hyperhomocysteinemia and hypercholesterolemia.
  • Types of cardiovascular disease include atherosclerosis
  • Ischaemic Heart Disease
  • Ischaemic heart disease is disease of the heart itself, characterized by reduced blood supply to the organs. This occurs when the arteries that supply the oxygen and the nutrients gets stopped and the heart will not get enough of the oxygen and the nutrients and will eventually stop beating.
  • Heart Failure
  • Heart failure, also called congestive heart failure (or CHF), and congestive cardiac failure (CCF), is a condition that can result from any structural or functional cardiac disorder that impairs the ability of the heart to fill with or pump a sufficient amount of blood throughout the body. Cor pulmonale is a failure of the right side of the heart.
  • Hypertensive Heart Disease
  • Hypertensive heart disease is heart disease caused by high blood pressure, especially localised high blood pressure. Conditions that can be caused by hypertensive heart disease include: left ventricular hypertrophy, coronary heart disease, (Congestive) heart failure, hypertensive cardiomyopathy, cardiac arrhythmias, inflammatory heart disease, etc.
  • Inflammatory heart disease involves inflammation of the heart muscle and/or the tissue surrounding it. Endocarditis comprises inflammation of the inner layer of the heart, the endocardium. The most common structures involved are the heart valves. Inflammatory cardiomegaly. Myocarditis comprises inflammation of the myocardium, the muscular part of the heart.
  • Valvular Heart Disease
  • Valvular heart disease is disease process that affects one or more valves of the heart. The valves in the right side of the heart are the tricuspid valve and the pulmonic valve. The valves in the left side of the heart are the mitral valve and the aortic valve. Included are aortic valve stenosis, mitral valve prolapse and valvular cardiomyopathy.
  • [The above text is adapted from Heart disease. (2009, Feb. 3). In Wikipedia, The Free Encyclopedia. Retrieved 06:33, Feb. 20, 2009, from http://en.wikipedia.org/w/index.php?title=Heart_disease&oldid=268290924]
    • Delivery of Particles
  • The particles as described in this document may be delivered to the human or animal body by any suitable means.
  • We therefore describe a delivery system for delivering a particles as described in this document to a target cell, tissue, organ, animal body or human body, and methods for using the delivery system to deliver particles to a target.
  • The delivery system may comprise a source of particles, such as a container containing the particles. The delivery system may comprise a dispenser for dispensing the particles to a target.
  • Accordingly, we provide a delivery system for delivering a particles, comprising a source of particles as described in this document together with a dispenser operable to deliver the particles to a target.
  • We further provide for the use of such a delivery system in a method of delivering a particles to a target.
  • Delivery systems for delivering fluid into the body are known in the art, and include injection, surgical drips, catheters (including perfusion catheters) such as those described in U.S. Pat. No. 6,139,524, for example, drug delivery catheters such as those described in U.S. Pat. No. 7,122,019.
  • Delivery to the lungs or nasal passages, including intranasal delivery, may be achieved using for example a nasal spray, puffer, inhaler, etc as known in the art (for example as shown in U.S. Design Pat. D544,957.
  • Delivery to the kidneys may be achieved using an intra-aortic renal delivery catheter, such as that described in U.S. Pat. No. 7,241,273.
  • It will be evident that the particular delivery should be configurable to deliver the required amount of particles at the appropriate interval, in order to achieve optimal treatment.
  • The particles may for example be used for the treatment or prevention of atherosclerosis. Here, perfusion of particles may be done intravenously to stabilize atherosclerotic plaques or reduce inflammation in the plaques. The particles may be used for the treatment or prevention of septic shock by intravenous perfusion.
  • The particles may be used for the treatment or prevention of heart failure. This may be achieved by chronic intracoronary or intramyocardially perfusion of particles to retard remodeling or retard heart failure. The particles may be used for the treatment or prevention of lung inflammation by intranasal delivery.
  • The particles may be used for the treatment or prevention of dermatological conditions e.g. psoriasis. Long term delivery of particles may be employed using transdermal microinjection needles until the condition is resolved.
  • It will be evident that the delivery method will depend on the particular organ to which the particles is to be delivered, and the skilled person will be able to determine which means to employ accordingly.
  • As an example, in the treatment of cardiac inflammation, the particles may be delivered for example to the cardiac tissue (i.e., myocardium, pericardium, or endocardium) by direct intracoronary injection through the chest wall or using standard percutaneous catheter based methods under fluoroscopic guidance for direct injection into tissue such as the myocardium or infusion of an inhibitor from a stent or catheter which is inserted into a bodily lumen.
  • Any variety of coronary catheter, or a perfusion catheter, may be used to administer the compound. Alternatively the particles may be coated or impregnated on a stent that is placed in a coronary vessel.
    • Tissue Regeneration
  • Mesenchymal stem cells and differentiated cells made according to the methods and compositions described here, and particles derived therefrom, may also be used for tissue reconstitution or regeneration in a human patient in need thereof. The cells are administered in a manner that permits them to graft to the intended tissue site and reconstitute or regenerate the functionally deficient area.
  • For example, the methods and compositions described here may be used to modulate the differentiation of stem cells. Mesenchymal stem cells and differentiated cells and particles derived therefrom may be used for tissue engineering, such as for the growing of skin grafts. Modulation of stem cell differentiation may be used for the bioengineering of artificial organs or tissues, or for prosthetics, such as stents.
    • Cancer
  • Mesenchymal stem cells and differentiated cells made by the methods and compositions described here and particles derived therefrom may be used for the treatment of cancer.
  • The terms “cancer” and “cancerous” refer to or describe the physiological condition in mammals that is typically characterized by unregulated cell growth. Examples of cancer include but are not limited to, carcinoma, lymphoma, blastoma, sarcoma, and leukemia.
  • More particular examples of such cancers include squamous cell cancer, small-cell lung cancer, non-small cell lung cancer, gastric cancer, pancreatic cancer, glial cell tumors such as glioblastoma and neurofibromatosis, cervical cancer, ovarian cancer, liver cancer, bladder cancer, hepatoma, breast cancer, colon cancer, colorectal cancer, endometrial carcinoma, salivary gland carcinoma, kidney cancer, renal cancer, prostate cancer, vulval cancer, thyroid cancer, hepatic carcinoma and various types of head and neck cancer. Further examples are solid tumor cancer including colon cancer, breast cancer, lung cancer and prostrate cancer, hematopoietic malignancies including leukemias and lymphomas, Hodgkin's disease, aplastic anemia, skin cancer and familiar adenomatous polyposis. Further examples include brain neoplasms, colorectal neoplasms, breast neoplasms, cervix neoplasms, eye neoplasms, liver neoplasms, lung neoplasms, pancreatic neoplasms, ovarian neoplasms, prostatic neoplasms, skin neoplasms, testicular neoplasms, neoplasms, bone neoplasms, trophoblastic neoplasms, fallopian tube neoplasms, rectal neoplasms, colonic neoplasms, kidney neoplasms, stomach neoplasms, and parathyroid neoplasms. Breast cancer, prostate cancer, pancreatic cancer, colorectal cancer, lung cancer, malignant melanoma, leukaemia, lympyhoma, ovarian cancer, cervical cancer and biliary tract carcinoma are also included.
  • The mesenchymal stem cells and differentiated cells made according to the methods and compositions described here may also be used in combination with anticancer agents such as endostatin and angiostatin or cytotoxic agents or chemotherapeutic agent. For example, drugs such as such as adriamycin, daunomycin, cis-platinum, etoposide, taxol, taxotere and alkaloids, such as vincristine, and antimetabolites such as methotrexate. The term “cytotoxic agent” as used herein refers to a substance that inhibits or prevents the function of cells and/or causes destruction of cells. The term is intended to include radioactive isotopes (e.g. I, Y, Pr), chemotherapeutic agents, and toxins such as enzymatically active toxins of bacterial, fungal, plant or animal origin, or fragments thereof.
  • Also, the term includes oncogene product/tyrosine kinase inhibitors, such as the bicyclic ansamycins disclosed in WO 94/22867; 1,2-bis(arylamino) benzoic acid derivatives disclosed in EP 600832; 6,7-diamino-phthalazin-1-one derivatives disclosed in EP 600831; 4,5-bis(arylamino)-phthalimide derivatives as disclosed in EP 516598; or peptides which inhibit binding of a tyrosine kinase to a SH2-containing substrate protein (see WO 94/07913, for example). A “chemotherapeutic agent” is a chemical compound useful in the treatment of cancer. Examples of chemotherapeutic agents include Adriamycin, Doxorubicin, 5-Fluorouracil (5-FU), Cytosine arabinoside (Ara-C), Cyclophosphamide, Thiotepa, Busulfan, Cytoxin, Taxol, Methotrexate, Cisplatin, Melphalan, Vinblastine, Bleomycin, Etoposide, Ifosfamide, Mitomycin C, Mitoxantrone, Vincristine, VP-16, Vinorelbine, Carboplatin, Teniposide, Daunomycin, Caminomycin, Aminopterin, Dactinomycin, Mitomycins, Nicotinamide, Esperamicins (see U.S. Pat. No. 4,675,187), Melphalan and other related nitrogen mustards, and endocrine therapies (such as diethylstilbestrol (DES), Tamoxifen, LHRH antagonizing drugs, progestins, anti-progestins etc).
    • Obtaining Mesenchymal Stem Cells (MSC)
  • The particles described here may be isolated or produced from mesenchymal stem cell conditioned medium (MSC-CM). MSCs suitable for use in the production of conditioned media and particles may be made by any method known in the art.
  • In particular, MSCs may be made by propagating a cell obtained by dispersing a embryonic stem (ES) cell colony, or a descendent thereof, in the absence of co-culture in a serum free medium comprising FGF2. This is described in detail in the sections below.
  • The prior art methods of obtaining mesenchymal stem cells (MSC) or MSC-like cells from hESCs involve either transfection of a human telomerase reverse transcriptase (hTERT) gene into differentiating hESCs (Xu et al., 2004) or coculture with mouse OP9 cell line (Barberi et al., 2005). The use of exogenous genetic material and mouse cells in these derivation protocols introduces unacceptable risks of tumorigenicity or infection of xenozootic infectious agents.
  • The particles may therefore be made from MSCs derived by the use of a clinically relevant and reproducible protocol for isolating similar or identical (such as homogenous) MSC populations from differentiating hESCs. In general, the method comprises dispersing a embryonic stem (ES) cell colony into cells. The cells are then plated out and propagated. The cells are propagated in the absence of co-culture in a serum free medium comprising fibroblast growth factor 2 (FGF2), in order to obtain mesenchymal stem cells (MSCs).
  • Thus, the protocol does not require serum, use of mouse cells or genetic manipulations and requires less manipulations and time, and is therefore highly scalable. The protocol may be used for the isolation of MSCs from two different hESC lines, HuES9 and H-1 and also a third one, Hes-3. Human ES cell derived MSCs (hESC-MSCs) obtained by the methods and compositions described here are remarkably similar to bone-marrow derived MSCs (BM-MSCs).
  • The embryonic stem cell culture may comprise a human embryonic stem cell (hESC) culture.
  • In a one embodiment, a method of generating mesenchymal stem cells (MSC) comprises trypsinizing and propagating hESCs without feeder support in media supplemented with FGF2 and optionally PDGF AB before sorting for CD105+CD24-cells.
  • The method may comprise sorting for CD105+, CD24− cells from trypsinized hESCs one week after feeder-free propagation in a media supplemented with FGF2 and optionally PDGF AB will generate to generate a hESC-MSC cell culture in which at least some, such as substantially all, or all cells are similar or identical (such as homogenous) to each other.
  • The MSCs produced by this method may be used to produce mesenchymal stem cell conditioned medium (MSC-CM), from which the particles may be isolated.
  • Disaggregating Embryonic Stem Cell Colonies
  • One method of producing mesenchymal stem cells may comprise dispersing or disaggregating an embryonic stem cell colony into cells.
  • The embryonic stem cell colony may comprise a huES9 colony (Cowan C A, Klimanskaya I, McMahon J, Atienza J, Witmyer J, et al. (2004) Derivation of embryonic stem-cell lines from human blastocysts. N Engl J Med 350: 1353-1356) or a H1 ESC colony (Thomson J A, Itskovitz-Eldor J, Shapiro S S, Waknitz M A, Swiergiel J J, et al. (1998) Embryonic Stem Cell Lines Derived from Human Blastocysts. Science 282: 1145-1147).
  • The cells in the colony may be disaggregated or dispersed to a substantial extent, i.e., at least into clumps. The colony may be disaggregated or dispersed to the extent that all the cells in the colony are single, i.e., the colony is completely disaggregated.
  • The disaggregation may be achieved with a dispersing agent.
  • The dispersing agent may be anything that is capable of detaching at least some embryonic stem cells in a colony from each other. The dispersing agent may comprise a reagent which disrupts the adhesion between cells in a colony, or between cells and a substrate, or both. The dispersing agent may comprise a protease.
  • The dispersing agent may comprise trypsin. The treatment with trypsin may last for example for 3 minutes or thereabouts at 37 degrees C. The cells may then be neutralised, centrifuged and resuspended in medium before plating out.
  • The method may comprise dispersing a confluent plate of human embryonic stem cells with trypsin and plating the cells out.
  • The disaggregation may comprise at least some of the following sequence of steps: aspiration, rinsing, trypsinization, incubation, dislodging, quenching, re-seeding and aliquoting. The following protocol is adapted from the Hedrick Lab, UC San Diego (http://hedricklab.ucsd.edu/Protocol/COSCell.html).
  • In the aspiration step, the media is aspirated or generally removed from the vessel, such as a flask. In the rinsing step, the cells are rinsed with a volume, for example 5-10 mls, of a buffered medium, which is may be free from Ca2+ and Mg2+. For example, the cells may be rinsed with calcium and magnesium free PBS. In the trypsinization step, an amount of dispersing agent in buffer is added to the vessel, and the vessel rolled to coat the growing surface with the dispersing agent solution. For example, 1 ml of trypsin in Hank's BSS may be added to a flask.
  • In the incubation step, the cells are left for some time at a maintained temperature. For example, the cells may be left at 37° C. for a few minutes (e.g., 2 to 5 minutes). In the dislodging step, the cells may be dislodged by mechanical action, for example by scraping or by whacking the side of the vessel with a hand. The cells should come off in sheets and slide down the surface.
  • In the quenching step, a volume of medium is added to the flask. The medium may comprise a neutralising agent to stop the action of the dispersing agent. For example, if the dispersing agent is a protease such as trypsin, the medium may contain a protein, such as a serum protein, which will mop up the activity of the protease. In a particular example, 3 ml of serum containing cell culture medium is added to the flask to make up a total of 4 mls. The cells may be pipetted to dislodge or disperse the cells.
  • In the re-seeding step, the cells are re-seeded into fresh culture vessels and fresh medium added. A number of re-seedings may be made at different split ratios. For example, the cells may be reseeded at 1/15 dilution and 1/5 dilution. In a particular example, the cells may be re-seeded by adding 1 drop of cells into a 25 cm2 flask and 3 drops into another to re-seed the culture, and 7-8 mls media is then added to each to provide for 1/15 dilution and 1/5 dilution from for example a 75 cm2 flask. In the aliquoting step, the cells may be aliquoted into new dishes or whatever split ratio is desired, and media added.
  • In a specific embodiment, the method includes the following steps: human ES cells are first grown suspended in non-adherent manner to form embryoid bodies (EBs). 5-10 day old EBs are then trypsinized before plating as adherent cells on gelatine coated tissue culture plates.
  • Maintenance as Cell Culture
  • The disaggregated cells may be plated and maintained as a cell culture.
  • The cells may be plated onto a culture vessel or substrate such as a gelatinized plate. Crucially, the cells are grown and propagated without the presence of co-culture, e.g., in the absence of feeder cells.
  • The cells in the cell culture may be grown in a serum-free medium which is supplemented by one or more growth factors such as fibroblast growth factor 2 (FGF2) and optionally platelet-derived growth factor AB (PDGF AB), at for example 5 ng/ml. The cells in the cell culture may be split or subcultured 1:4 when confluent, by treatment with trypsin, washing and replating.
  • Absence of Co-Culture
  • The cells may be cultured in the absence of co-culture. The term “co-culture” refers to a mixture of two or more different kinds of cells that are grown together, for example, stromal feeder cells.
  • Thus, in typical ES cell culture, the inner surface of the culture dish is usually coated with a feeder layer of mouse embryonic skin cells that have been treated so they will not divide. The feeder layer provides an adherent surface to enable the ES cells to attach and grow. In addition, the feeder cells release nutrients into the culture medium which are required for ES cell growth. In the methods and compositions described here, the ES and MSC cells may be cultured in the absence of such co-culture.
  • The cells may be cultured as a monolayer or in the absence of feeder cells. The embryonic stem cells may be cultured in the absence of feeder cells to establish mesenchymal stem cells (MSC).
  • The dissociated or disaggregated embryonic stem cells may be plated directly onto a culture substrate. The culture substrate may comprise a tissue culture vessel, such as a Petri dish. The vessel may be pre-treated. The cells may be plated onto, and grow on, a gelatinised tissue culture plate.
  • An example protocol for the gelatin coating of dishes follows. A solution of 0.1% gelatin in distilled water is made and autoclaved. This may be stored at room temp. The bottom of a tissue culture dish is covered with the gelatin solution and incubated for 5-15 min. Remove gelatin and plates are ready to use. Medium should be added before adding cells to prevent hypotonic lysis.
  • Serum Free Media
  • The dissociated or disaggregated embryonic stem cells may be cultured in a medium which may comprise a serum-free medium.
  • The term “serum-free media” may comprise cell culture media which is free of serum proteins, e.g., fetal calf serum. Serum-free media are known in the art, and are described for example in U.S. Pat. Nos. 5,631,159 and 5,661,034. Serum-free media are commercially available from, for example, Gibco-BRL (Invitrogen).
  • The serum-free media may be protein free, in that it may lack proteins, hydrolysates, and components of unknown composition. The serum-free media may comprise chemically-defined media in which all components have a known chemical structure. Chemically-defined serum-free media is advantageous as it provides a completely defined system which eliminates variability allows for improved reproducibility and more consistent performance, and decreases possibility of contamination by adventitious agents.
  • The serum-free media may comprise Knockout DMEM media (Invitrogen-Gibco, Grand Island, N.Y.).
  • The serum-free media may be supplemented with one or more components, such as serum replacement media, at a concentration of for example, 5%, 10%, 15%, etc. The serum-free media may comprise or be supplemented with 10% serum replacement media from Invitrogen—Gibco (Grand Island, N.Y.).
  • Growth Factor
  • The serum-free medium in which the dissociated or disaggregated embryonic stem cells are cultured may comprise one or more growth factors. A number of growth factors are known in the art, including PDGF, EGF, TGF-a, FGF, NGF, Erythropoietin, TGF-b, IGF-I and IGF-II.
  • The growth factor may comprise fibroblast growth factor 2 (FGF2). The medium may also contain other growth factors such as platelet-derived growth factor AB (PDGF AB). Both of these growth factors are known in the art. The method may comprise culturing cells in a medium comprising both FGF2 and PDGF AB.
  • Alternatively, or in addition, the medium may comprise or further comprise epidermal growth factor (EGF). Use of EGF may enhance growth of MSCs. EGF may be used at any suitable concentration, for example 5-10 ng/ml EGF. EGF may be used in place of PDGF. EGF is a protein well known in the art, and is referred to as symbol EGF, Alt. Symbols URG, Entrez 1950, HUGO 3229, OMIM 131530, RefSeq NM—001963, UniProt P01133.
  • Thus, we disclose the use of media comprising (i) FGF2, (ii) FGF2 and PDGF and (iii) FGF2 and EGF and other combinations.
  • FGF2 is a wide-spectrum mitogenic, angiogenic, and neurotrophic factor that is expressed at low levels in many tissues and cell types and reaches high concentrations in brain and pituitary. FGF2 has been implicated in a multitude of physiologic and pathologic processes, including limb development, angiogenesis, wound healing, and tumor growth. FGF2 may be obtained commercially, for example from Invitrogen-Gibco (Grand Island, N.Y.).
  • Platelet Derived Growth Factor (PDGF) is a potent mitogen for a wide range of cell types including fibroblasts, smooth muscle and connective tissue. PDGF, which is composed of a dimer of two chains termed the A chain and B chain, can be present as AA or BB homodimers or as an AB heterodimer. Human PDGF-AB is a 25.5 kDa homodimer protein consisting of 13.3 kDa A chain and 12.2 B chain. PDGF AB may be obtained commercially, for example from Peprotech (Rocky Hill, N.J.).
  • The growth factor(s), such as FGF2 and optionally PDGF AB, may be present in the medium at concentrations of about 100 pg/ml, such as about 500 pg/ml, such as about 1 ng/ml, such as about 2 ng/ml, such as about 3 ng/ml, such as about 4 ng/ml, such as about 5 ng/ml. In some embodiments, the medium contains FGF2 at about 5 ng/ml. The medium may also contain PDGF AB, such as at about 5 ng/ml.
  • Splitting Cells
  • Cells in culture will generally continue growing until confluence, when contact inhibition causes cessation of cell division and growth. Such cells may then be dissociated from the substrate or flask, and “split”, subcultured or passaged, by dilution into tissue culture medium and replating.
  • The methods and compositions described here may therefore comprise passaging, or splitting during culture. The cells in the cell culture may be split at a ratio of 1:2 or more, such as 1:3, such as 1:4, 1:5 or more. The term “passage” designates the process consisting in taking an aliquot of a confluent culture of a cell line, in inoculating into fresh medium, and in culturing the line until confluence or saturation is obtained.
  • Selection, Screening or Sorting Step
  • The method may further comprise a selection or sorting step, to further isolate or select for mesenchymal stem cells.
  • The selection or sorting step may comprise selecting mesenchymal stem cells (MSC) from the cell culture by means of one or more surface antigen markers. The use of a selection or sorting step further enhances the stringency of sorting and selection specificity for MSCs and furthermore potentially reduces possible contamination from embryonic stem cells such as hESCs and other hESC-derivatives from the starting material. This would then further reduce the risk of teratoma formation and further increase the clinical relevance of the protocol we describe.
  • A number of methods are known for selection or sorting based on antigen expression, and any of these may be used in the selection or sorting step described here. The selection or sorting may be achieved by means of fluorescence activated cell sorting (FACS). Thus, as known in the art, FACS involves exposing cells to a reporter, such as a labelled antibody, which binds to and labels antigens expressed by the cell. Methods of production of antibodies and labelling thereof to form reporters are known in the art, and described for example in Harlow and Lane. The cells are then passed through a FACS machine, which sorts the cells from each other based on the labelling. Alternatively or in addition, magnetic cell sorting (MACS) may be employed to sort the cells.
  • We have realised that while a number of candidate surface antigens known to be associated with MSCs e.g. CD105, CD73, ANPEP, ITGA4 (CD49d), PDGFRA, some of the MSC associated surface antigens e.g. CD29 and CD49e are also highly expressed in ES cells such as hESCs and their expression are verified by FACS analysis. The association of a surface antigen with MSCs may not be sufficient to qualify the antigen as a selectable marker for isolating MSCs from ES cells such as hESC. Accordingly, the selection or sorting step may employ antigens which are differentially expressed between MSCs and ES cells.
  • The selection or sorting step of our method may positively select for mesenchymal stem cells based on the expression of antigens. Such antigens may be identified by, for example, comparing the gene expression profiles of hESCs and hESCMSCs. In particular embodiments, the selection or sorting may specifically make use of any of the antigens shown in Table E1A and E1B below.
  • The selection or sorting step of our method may positively select for mesenchymal stem cells based on the expression of antigens which are identified as expressed on MSCs, but not expressed on ES cells such as hESCs.
  • CD73 is highly expressed on MSCs, while being not highly expressed on hESCs. Both CD73 and CD105 are highly expressed surface antigens in MSCs and are among the top 20 highly expressed surface antigens in hESC-MSCs relative to hESC, the use of either CD73 or CD105 (or both) as selectable marker for putative MSCs will be equally effective in sorting for putative MSCs generated by differentiating hESCs.
  • Alternatively, or in addition, the selection or sorting step may negatively select against antigens based on surface antigens that are highly expressed as surface antigen on embryonic stem cells (ES cells) such as hESCs, and not mesenchymal stem cells e.g., hESC-MSC. Selection or sorting may be based on known or previously identified hESC-specific surface antigens such as MIBP, ITGB1BP3 and PODXL, and CD24.
  • FACS analysis confirms the expression of CD24 on hESC but not hESC-MSCs. Therefore, CD24 may be used as a negative selection or sorting marker either on its own, or in conjunction with CD105 as a positive selectable marker for isolating putative MSCs from differentiating hESC cultures.
    • EXAMPLES
  • Mesenchymal stem cells (MSCs) derived from adult bone marrow have emerged as one of the most promising stem cell types for treating cardiovascular disease (Pittenger and Martin, 2004). Although the therapeutic effects of autologous MSCs have been attributed to their potential to differentiate into many different reparative or replacement cell types such as cardiomyocytes, endothelial cells and vascular smooth cells (Minguell and Erices, 2006; Zimmet and Hare, 2005), the differentiation efficiency of transplanted MSCs into therapeutically relevant numbers of functional reparative cells in injured tissues remains to be established.
  • Recent reports suggest that some of these reparative effects are mediated by paracrine factors secreted by MSCs (Caplan and Dennis, 2006a; Gnecchi et al., 2005; Gnecchi et al., 2006; Schafer and Northoff, 2008). This paracrine hypothesis introduces a radically different dimension to the use of stem cells, particularly MSCs, in regenerative medicine. Potential mechanisms of MSC paracrine actions include endogenous regenerative capacity, angio- and arteriogenesis, attenuating remodeling, and reducing apoptosis. If the therapeutic effects of MSCs are partly mediated by their secretions, the repertoire of stem cell-based therapies could be extended by application of their secreted factors. Such an approach could potentially provide an “off-the-shelf” MSC-based therapeutic option, which is a requisite for time-sensitive protection against reperfusion injury in patients with acute MI, at affordable costs and with excellent quality control and consistency.
  • In support of this paracrine hypothesis, many studies have identified the presence of cytokines, chemokines and growth factors that could potentially repair injured cardiac tissues mainly through cardiac and vascular tissue growth and regeneration (Caplan and Dennis, 2006b; Liu and Hwang, 2005). We further supported this hypothesis by performing the first in-depth proteomic analysis of the MSC paracrine secretion (Sze et al., 2007). This was facilitated by our derivation of highly expandable and identical MSC cultures from human ESCs (Lian et al., 2007) and the use of a chemically defined medium to culture the cells and harvest the secretion via the conditioned medium (CM). Surprisingly, many of the secreted proteins were intracellular proteins and are not known to be secreted or transported across plasma membrane. Computational analysis of the secretome predicted that collectively, the secretome has the potential to repair injured tissues such as myocardial ischemia/reperfusion (MI/R) injury (Sze et al., 2007).
  • To test the computational prediction, the secretion in the form of CM was administered to a pig model of MI/R injury (Timmers et al., 2008). During myocardial ischemia caused by occlusion of a coronary artery, reperfusion therapy is currently the most effective treatment modality. However, reperfusion which involves the opening of the blocked artery to restore blood flow or reperfusion also induces injury to the newly perfused ischemic tissues (Saraste et al., 1997). Therefore the effectiveness of reperfusion therapy could be greatly improved if reperfusion injury could be neutralized immediately at the point of reperfusion. When the CM was delivered intra-coronary to the pig model of MI/R injury immediately after reperfusion, there was a 60% reduction in myocardial infarction, preservation of cardiac function and reduced oxidative stress as early as 4 hours after reperfusion. This confirmed that the paracrine secretion of MSC can ameliorate MI/R injury in a clinically relevant animal model (Timmers et al., 2008).
  • However, the mechanism by which the secretion mediates this immediate effect on MI/R injury is not clear. It is obvious that the immediacy of this protective effect precludes the relatively lengthy process of tissue regeneration as part of the mechanism. Also, many of the secreted proteins are intracellular proteins and are not known to cross plasma membranes readily. To better understand the pararcine effects of MSCs, we systematically fractionated the CM using membranes with different molecular weights cut-off (MWCO) to identify and profile the composition of the active fraction. We previously showed that CM filtered through 0.2 μM membrane but not 1000 kDa MWCO was cardioprotective (Timmers et al., 2008). However, CM partially concentrated against membrane with 1000 kDa MWCO was cardioprotective. This suggested that the cardioprotective effect was mediated by large complexes with diameter of 50-100 nm.
  • Here we extended our previously reported list of proteins in the secretion to >700 proteins and these proteins include many proteins that are commonly found in exosmes. We also identified the presence of RNA (<300 nts) in the secretion. Furthermore, the proteins and RNA were encapsulated in phospholipid vesicles and the only detectable particles in the secretion within the hydrodynamic radius (rh) range of 1-1000 nm were of rh=45-55 nm. These particles eluted as a single peak on HPLC fractionation. Together, these studies demonstrate that the large cardioprotective complex in the secretion carry many of the distinctive feature of an exosome leading to our hypothesis that the active cardioprotective component in the secretion is an exosome.
    • Example 1 Materials and Methods: MSC-CM Preparation
  • The protocols for MSC generation and CM preparation have been described previously15,16.
  • In short, a chemically defined serum free culture medium is conditioned by MSCs derived from human embryonic stem cells (hESCs), using a clinically compliant protocol. Three polyclonal, karyotypically stable, and phenotypically MSC-like cultures, that do not express pluripotency-associated markers but displayed MSC-like surface antigens (CD29+, CD44+, CD49a+/e+, CD105+, CD166+, CD34−, CD45−) and gene expression profile, are generated by trypsinization and propagation of hESCs from either HuES9 hESC line or H1 hESC line in feeder- and serum-free selection media15.
  • One of these cultures, HuES9.E1 can be stably expanded for at least 80 population doublings. To harvest MSC secretion, hESC-derived MSC cultures are transferred to a chemically defined, serum free culture medium to condition the medium for three days before the media containing MSC secretions are collected, clarified by centrifugation, concentrated 25 times using 10 kDa MW cut-off ultrafiltration membranes and sterilized by filtration through a 220 nm filter.
  • The secretory proteome is analyzed by multidimensional protein identification technology (MuDPIT) and cytokine antibody array analysis, and revealed the presence of 201 unique gene products. Computational analyses disclosed that this CM holds potential cytoprotective properties16.
    • Example 2 Materials and Methods: Animals
  • All experiments are performed in accordance with the “Guide for the Care and Use of Laboratory Pigs” prepared by the Institute of Laboratory Animal Resources and with prior approval by the Animal Experimentation Committee of the Faculty of Medicine, Utrecht University, the Netherlands.
    • Example 3 Materials and Methods: Study Design
  • Thirty female Dalland Landrace pigs (60-70 kg; IDDLO, Lelystad, The Netherlands), all pretreated with clopidogrel 75 mg/day for 3 days and amiodarone 400 mg/day for 10 days, are randomly assigned to MSC-CM, non-CM, or saline treatment.
  • The saline group is added to assess a potential effect of fresh, non-conditioned culture medium. In all pigs, MI is induced by 75 minutes of proximal left circumflex coronary artery (LCxCA) ligation and 4 hours of subsequent reperfusion. An ischemic period of 75 minutes is selected to inflict severe myocardial injury without inducing completely transmural myocardial infarction. The 4 hour reperfusion period is used, because infarct size measurement using TTC staining is most reliable after 3 hours of reperfusion17. After longer periods of reperfusion, it becomes more difficult to assess oxidative stress status and apoptotic mechanisms.
  • Treatment is initiated 5 minutes before the onset of reperfusion by intravenous infusion of MSC-CM (1.0 ml, 2.0 mg protein) non-CM or saline. Immediately following reperfusion, an additional intracoronary bolus MSC-CM (4.0 ml, 8.0 mg protein), non-CM or saline is given. Myocardial infarct size and function are assessed 4 hours after reperfusion.
    • Example 4 Materials and Methods: MI and Operational Procedure
  • During the entire operation, ECG, Systemic Arterial Pressure, and capnogram are monitored continuously. Under general anesthesia as described before18, a median sternotomy is performed and two introduction sheets are inserted in the carotid arteries for a 6 Fr guiding catheter and an 8 Fr conductance catheter (CD Leycom, Zoetermeer, the Netherlands).
  • The distal tip of a Swan Ganz catheter is placed into the pulmonary artery via the internal jugular vein. Transonic flow probes (Transonic Systems Inc, Ithaca, N.Y.) are placed around the proximal aorta and LCxCA to measure cardiac output and coronary flow, and a wire is placed around the inferior caval vein to enable functional measurements under varying loading conditions for PV loops.
  • After functional measurements, 10.000 IU of heparin are administered intravenously and sutures are tightened to occlude the proximal LCxCA. Internal defibrillation with 50 J is used when ventricular fibrillation occurred. After 75 minutes of ischemia, the LCxCA is reopened by release of the suture. Immediately following reperfusion, Nitroglycerine (0.1 mg to prevent no-reflow) is infused through the LCxCA via the guiding catheter, followed by intracoronary treatment with MSC-CM, non-CM or saline. After 4 hours of reperfusion, the final functional measurements are performed and the heart is explanted for infarct size analysis.
    • Example 5 Materials and Methods: Functional Measurements
  • Left ventricular (LV) pressure and volume are measured using the conductance catheter method, as described previouslyl18. LV pressure and volume signals derived from the conductance catheter are displayed and acquired at a 250-Hz sampling rate with a Leycom CFL-512 (CD Leycom).
  • Data are acquired during steady state and during temporal caval vein occlusion, all with the ventilator turned off at end expiration. Analysis of the pressure-volume loops is performed with custom software as described previouslyl19. In addition, short-axis epicardial ultrasound images (Prosound SSD-5000, 5-MHz probe UST-5280-5, Aloka Holding Europe AG, Zug, Switzerland) are obtained at the midpapillary muscle level. Wall thickness (WT) of the infarct area, remote area (septum) and LV internal area (LVia) are measured at end diastole (ED) and end systole (ES). Systolic wall thickening (SWT) is calculated as [(WT(ES)−WT(ED))/WT(ED)]*100%, fractional area shortening (FAS) as [(LVia(ES)−LVia (ED))/LVia (ED)]* 100%, and left ventricular ejection fraction (LVEF) as [(EDV−ESV)/EDV]*100%.
  • The end-diastolic chamber stiffness is quantified by means of linear regression of the end-diastolic pressure-volume relationship. Echocardiography and PV loops are measured before MI, 1 hour after ischemia and 4 hours after reperfusion. To challenge stunned myocardium, additional measurements are performed during pharmaceutically induced stress by intravenous dobutamine infusion (2.5 μg/kg/min and 5.0 μg/kg/min).
    • Example 6 Materials and Methods: Infarct Size
  • Just prior to excision of the heart, the LCxCA (pigs) or LCA (mice) is religated at exactly the same spot as for the induction of the MI. Evans blue dye is infused through the coronary system to delineate the area at risk (AAR).
  • The heart is then excised, the LV is isolated and cut into 5 slices from apex to base. The slices are incubated in 1% triphenyltetrazolium chloride (TTC, Sigma-Aldrich Chemicals, Zwijndrecht, the Netherlands) in 37° C. Sörensen buffer (13.6 g/L KH2PO4+17.8 g/L Na2H PO4.2H2O, pH 7.4) for 15 minutes to discriminate infarct tissue from viable myocardium.
  • All slices are scanned from both sides, and in each slide, the infarct area is compared with area at risk and the total area by use of digital planimetry software (Image J). After correction for the weight of the slices, infarct size is calculated as a percentage of the AAR and of the LV.
    • Example 7 Materials and Methods: Oxidation Induced Cell Death Assay
  • Human leukemic CEM cells are incubated in either CM or non-CM, and treated with 50 μM H2O2 to induce oxidative stress. Cell viability is assessed using Trypan Blue exclusion at 12, 24, 36 and 48 hours after H2O2 treatment.
    • Example 8 Materials and Methods: Immunostaining
  • Nuclear oxidative stress in the ischemia and reperfusion area is assessed by immunostaining for 8-hydroxy-2′-deoxyguanosine (8-OHdG), a product of oxidative stress to DNA. Tissue samples are fixed in 4% formalin before being embedded in paraffin.
  • Following antigen retrieval in 10 mM citric acid, the tissue sections are incubated with 10% normal horse serum for 30 minutes, mouse-anti-8-OHdG (OXIS international, Foster City, Calif., USA) 1:20 in 0.1% PBSA over night at 4° C., biotin labeled horse-anti-mouse (Vector laboratories, Burlingame, Calif., USA) 1:500 for 1 hour and with streptavidin-HRPO 1:1000 for 1 hour.
  • Finally, the sections are incubated with H2O2-diaminobenzidine for 10 minutes. The amount of 8-OHdG positive nuclei is quantified in 4 randomly picked fields per section with digital image microscopy software Analysis (Olympus, Münster, Germany) at 200× magnification.
    • Example 9 Materials and Methods: Western Blotting
  • Protein is isolated from frozen tissue samples collected from the ischemia/reperfusion area of pigs using 1 ml Tripure Isolation Reagent (Boehringer, Mannheim, Germany) according to the manufacturer's protocol. For western blotting, 8 μg total protein is separated on a 10% SDS-PAGE gel, transferred onto a Nitrocellulose C membrane (Amersham, Buckinghamshire, UK) and blocked using Phosphate Buffered Saline (PBS)—0.1% Tween—5% Protifar (Nutricia, Netherlands).
  • The membrane is incubated with a rabbit antibody for phosphoSMAD2 1:1000 (Cell Signalling Technology), for active caspase 3 1:100 (Chemicon, Germany), or for beta-tubulin 1:5000 (Abcam, Cambridge, UK), and subsequently with goat-anti-rabbit HRP 1:2000 (DAKO, Glostrup, Denmark). Chemiluminescence substrate (NENk Life Science Products) is used for detection; the bands are analyzed using the Gel Doc 1000 system (Biorad, Veenendaal, Netherlands).
    • Example 10 Materials and Methods: MSC-CM Fractionation
  • The MSC-CM is prepared by sterile filtration through a 220 nm filter and concentrated through a 10 nm filter and therefore contains components between 10 and 220 nm. Subsequently, a <1000 kDa fraction is prepared by filtering the MSC-CM through a 1000 kDa MW cut-off membrane with a 100 nm nominal pore size (Pall Corporation, Singapore), generating a fraction containing products between 10 and 100 nm.
  • To identify the fraction containing the factor(s) within the medium that confers cardioprotection (10-100 nm or 100-220 nm), a mouse or pig model of ischemia and reperfusion injury is used. MI is induced by 30 minutes left coronary artery (LCA) occlusion and subsequent reperfusion. Mice are treated with 20 μl unfractionated MSC-CM (10-220 nm), the <1000 kDa fraction (10-100 nm), or saline intravenously via the tail vein, 5 minutes before reperfusion. Infarct size is assessed 24 hours later using Evans blue and TTC as described previously.
    • Example 11 Materials and Methods: Data Analysis
  • Data are presented as mean±SEM. Values are collected in a blinded fashion and compared using one-way ANOVA with post hoc bonferroni tests in SPSS 11.5. P-value <0.05 is considered significant.
    • Example 12 Results: Mortality
  • Four pigs died due to refractory ventricular fibrillation during the ischemia, before treatment, and are therefore excluded from the study. All pigs that are treated with CM (n=9), non-CM (n=9) or saline (n=8) also survived the follow up period.
    • Example 13 Results: Infarction Size
  • Infarct size, compared to the area at risk (AAR) as well as compared to the LV, is markedly reduced in pigs treated with MSC-CM compared to those treated with non-CM and saline (FIG. 1). MSC-CM treatment resulted in approximately 60% reduction of infarct size. Importantly, the AAR is similar in all pigs, which indicates that the initial ischemic injury is similar in all pigs (Table E1 below).
  • TABLE E1
    Hemodynamic and Functional Parameters. Baseline values and
    myocardial infarction values of pigs treated with non-CM, CM or saline, determined with
    echocardiography and conductance catheters based LV pressure and volume
    measurements.
    baseline myocardial infarction
    parameter non-CM CM Saline non-CM CM Saline
    AAR — — — 35.1 ± 2.9 30.7 ± 1.6  32.4 ± 2.3
    IS (% of AAR) — — — 62.2 ± 5.0  25.4 ± 4.8†‡ 62.5 ± 8.4
    IS (% of LV) — — — 22.3 ± 2.9  7.6 ± 1.4†‡ 20.5 ± 3.1
    HR, bpm 83.5 ± 5.5 76.4 ± 5.7 77.6 ± 8.1 111.6 ± 6.3*   86 ± 7.5†   97 ± 5.5
    MAP, mmHg  93.7 ± 10.2 94.0 ± 5.4 100.9 ± 4.9   70.8 ± 9.1* 95.8 ± 4.3‡  68.5 ± 7.3*
    QLCx, ml/min 31.9 ± 2.8 28.7 ± 2.9 28.4 ± 4.1 29.9 ± 2.6 25.1 ± 2.6  25.6 ± 3.3
    CO, l/min  3.60 ± 0.14  3.25 ± 0.17  3.79 ± 0.23  2.61 ± 0.35*  3.15 ± 0.27‡  2.04 ± 0.20*
    WT infarct, cm  0.71 ± 0.04  0.64 ± 0.04  0.71 ± 0.03  1.23 ± 0.09*  0.93 ± 0.09*‡  1.30 ± 0.09*
    SWT infarct, % 56.3 ± 5.6 56.9 ± 4.8 61.8 ± 4.3  −6.1 ± 1.4*  18.7 ± 4.1*†‡  −7.0 ± 1.5*
    SWT remote, % 43.1 ± 3.3 43.0 ± 3.0 40.9 ± 4.2 43.7 ± 7.4 41.4 ± 6.1  37.8 ± 4.4
    FAS, % 42.7 ± 2.9 38.8 ± 2.9 41.3 ± 2.7  24.7 ± 2.6*  36.5 ± 2.0†‡  21.7 ± 1.2*
    EDV, ml 90.3 ± 8.2 86.2 ± 9.1 101.5 ± 7.1  70.2 ± 8.3 69.7 ± 5.2*  69.1 ± 11.6
    ESV, ml 47.8 ± 8.2 43.9 ± 6.2 53.0 ± 4.7 44.2 ± 6.0 31.4 ± 1.4* 47.5 ± 9.6
    SV, ml 44.5 ± 3.2 43.3 ± 5.0 49.6 ± 3.6  24.5 ± 4.0*  38.5 ± 4.2†‡  21.9 ± 2.7*
    EF, % 52.5 ± 5.0 51.7 ± 3.1 49.0 ± 2.7  38.8 ± 3.5*  54.2 ± 2.6†‡  34.7 ± 4.4*
    dP/dtmax, 1290 ± 118 1093 ± 83  1299 ± 76  1592 ± 226 1528 ± 130  1075 ± 68*
    mmHg/s
    dP/dtmin, −1614 ± 143  −1329 ± 113  −1650 ± 89   −983 ± 130* −1031 ± 116*   −910 ± 102*
    mmHg/s
    Stiffness,  0.13 ± 0.03  0.15 ± 0.03  0.14 ± 0.01  0.29 ± 0.06*  0.13 ± 0.01†‡  0.29 ± 0.05*
    mmHg/ml
    AAR indicates area at risk;
    IS, infarct size;
    LV, left ventricle;
    HR, heart rate;
    QLCx, left circumflex coronary artery flow;
    CO, cardiac output;
    WT, wall thickness;
    SWT, systolic wall thickening;
    FAS, fractional area shortening;
    EDV, end-diastolic volume;
    ESV, end-systolic volume;
    SV, stroke volume;
    EF, ejection fraction;
    Ees, end-systolic elastance.
    Non-CM, n = 9;
    CM, n = 9; saline, n = 8.
    *p < 0.05 vs. baseline;
    †p < 0.05 vs. non-CM;
    ‡p < 0.05 vs. saline.
    • Example 14 Results: Cardiac Function
  • Baseline parameters are similar in all groups (Table E1 above). During ischemia, the posterolateral wall became completely dyskinetic in all groups, as is observed by negative values of echocardiographic systolic wall thickening (SWT, FIG. 2A). Four hours after reperfusion, the reperfused posterolateral wall of both non-CM and saline control groups, is still dyskinetic. In the pigs treated with MCS-CM, however, SWT partly recovered (FIG. 2A).
  • Intravenous infusion of the β1-adrenergic receptor agonist dobutamine further increased systolic wall thickening in the MCS-CM treated pigs, whereas no improvement is seen in the control groups. Also global left ventricular systolic function decreased due to the ischemia (FIG. 2B). In the pigs treated with CM, the fractional area shortening increased after reperfusion, almost back to the baseline level, and increased above baseline level during dobutamine infusion.
  • In control pigs, global systolic function remained impaired. Improved cardiac function also became evident from the PV-loop derived indices (Table E1). Left ventricular EF and stroke volume are significantly higher in CM treated pigs. This translated into improved hemodynamic parameters such as cardiac output, mean arterial pressure and heart rate.
  • Diastolic function decreased in control groups following ischemia and reperfusion injury, as observed by increased end-diastolic myocardial stiffness. In the CM treated pigs however diastolic function is not impaired.
    • Example 15 Results: Oxidative Stress
  • Having demonstrated the reduction in infarct size and improvement of function, we used an in vitro assay of hydrogen peroxide (H2O2)-induced cell death to determine the effects of CM and non-CM on oxidative stress, a major cause of ischemia reperfusion injury.
  • We induced hydrogen peroxide (H2O2)-mediated oxidative stress in human leukemic CEM cells in the presence of either CM or non-CM and monitored cell viability by Trypan blue-exclusion. Results showed that CM significantly protected against (H2O2)— induced loss of cell viability compared to non-CM (p<0.05) (FIG. 3A).
  • To determine if CM also reduces oxidative stress in the hearts of CM-treated pigs, nuclear oxidative stress in tissue sections of pigs treated with CM, non-CM or saline is quantified by 8-OHdG immunostaining for oxidized DNA. Intense nuclear staining indicative of DNA oxidation is observed in sections of non-CM or saline-treated pigs compared to CM-treated pigs (FIGS. 3B-D). In addition, there are also significantly more positive nuclei in non-CM or saline-treated pigs (FIG. 3E).
  • Therefore, CM can confer cytoprotection against oxidative stress in vitro and in vivo.
    • Example 16 Results: TGF-β Signaling
  • The secretions of the MSCs contained many proteins involved in TGF-β signaling16. To assess the influence of CM treatment on TGF-β signaling in vivo, we quantified phosphorylated SMAD-2 in the myocardial tissue samples of CM treated pigs and control pigs by Western blotting. CM treatment resulted in reduced pSMAD2 expression, indicating that TGF-β signaling via ALK-5 is reduced (FIGS. 4A, B).
    • Example 17 Results: Apoptosis
  • Reperfusion injury causes cell death through apoptosis rather than necrosis20-22. To verify that CM treatment reduces apoptosis during reperfusion, we quantified the level of active caspase 3, a key mediator of apoptosis, by western blotting. In the pigs treated with MSC-CM, active caspase-3 levels are lower compared to both non-CM control and saline control suggesting that CM inhibits apoptosis in vivo (FIGS. 4C, D).
    • Example 18 Results: MSC-CM Fractionation
  • Unfractionated MSC-CM contains products between 10 and 220 nm. In order to come closer to identifying the cardioprotective factor(s) within the MSC-CM, a <1000 kDa fraction is generated containing products ranging in size from 10-100 nm. Unfractionated MSC-CM confers cardioprotection, whereas the <1000 kDa fraction does not (FIG. 5), indicating that the cardioprotective factor(s) are in the >1000 kDa fraction with size ranging from 100 to 220 nm.
    • Example 19 Results: Size Fractionation Did Not Segregate Secreted Proteins According to Molecular Weights
  • To identify the active component in the Conditioned Medium, we attempted to size-fractionate the Conditioned Medium into distinct MW fractions by filtering the Conditioned Medium through membranes with different MW cut-offs.
  • When the Conditioned Medium is filtered through a membrane of MW cut-off of 100 kD to generate a retentate to filtrate volume ratio of 4:1, most proteins <100 kD segregated into the >100 kD fraction, and not into the expected <100 kD fraction (FIG. 6). The ratio of the individual protein bands in both unfractionated Conditioned Medium and the >100 kD fraction are similar.
  • Most proteins with MW<300 kD also did not filter through membrane with a MW cut-off of 300 kD (FIG. 6). The MW sizes of some of the major protein bands in the filtrate are similar to that in the non-conditioned medium (NCM), and to exogenously added protein supplements in the culture media: insulin-transferrin-selenoprotein supplement (ITS), FGF2, EGF and PDGF AB (FIG. 7).
  • Together these observations suggest that proteins secreted by the cells are in complexes, and these secretion complexes are larger than 100 kD Proteins that are added exogenously to the culture medium as supplements, and that are less than 100 kD are readily filtered through membranes with MW cut off of 100 kD.
    • Example 20 Results: Biological Activity in Size-Fractionated Conditioned Medium with MW>1,000 kD or Diameter of 50-150 nm
  • To determine the upper and lower size limits of the putative secretion complex, we performed size fractionation of the Conditioned Medium and tested the biological activity in a mouse of ischemia reperfusion injury. As the Conditioned Medium is filtered through 0.2 μM filter and concentrated against a membrane with a MW cut-off of 10 kD, this effectively placed the putative secretion complex in the size range of between 2 to 200 nm (FIG. 8).
  • To narrow this size range further, we determine if there are biological activity in the filtrate from filtering the Conditioned Medium completely through membrane with a MW cut-off of 100 kD or 1000 kD, retentate from filtering the Conditioned Medium through membrane with a MW cut-off of 1000 kD. The volume of the retentate is ⅕ of the input volume. The fractions are tested on a mouse or pig model of myocardial ischemia (MI) and reperfusion injury.
  • In this model, MI is induced by 30 minutes left coronary artery (LCA) occlusion by suture ligation and reperfusion is initiated by removal of suture. Mice are treated with 20 μl unfractionated MSC-CM (10-220 nm), 20 μl of <100 or 1,000 kD fraction, 4 μl of >1000 kD retentate or saline intravenously via the tail vein, 5 minutes before reperfusion. 24 hours later, the hearts are excised. Before excision, the Area At Risk (AAR) is determined by relegating the LCA and then perfusing Evans blue through the aorta. AAR is defined as the area not stained by the dye and is expressed as a percentage of the left ventricular wall area. Infarct size is assessed 24 hours later using Evans blue and TTC as described previously.
  • The relative AAR in all animals are not significantly different (FIG. 9). However the relative infarct size is significantly reduced in animals treated with Conditioned Medium and the >1000 kD fraction when compared to saline (p=0.01 and 0.05, respectively) (FIG. 10). The <100 and <1000 kD fractions are not biologically active, suggesting that the putative active complex is >1000 kD. It is, however still possible that the complex is <1000 kD, and that passing the Conditioned Medium through the filters inactivates the complex
    • Example 21 Results: Electron Microscopy of Conditioned Medium Revealed the Presence of 50 to 200 nm Particles
  • Electron microscopy analysis of the Conditioned Medium is performed using standard methodology. Briefly, the Conditioned Medium in PBS is loaded onto formwar carbon coated grids (Ted Pella Inc, Redding, Calif., USA cat no 01800N-F), fixed in 2.5% glutaraldehyde, washed, contrasted in 2% uranyl acetate, embedded in a mixture of uranyl acetate (0.8%) and methyl cellulose (0.13%), and examined under an electron microscope. Consistent with the size fractionation studies above, we observed the presence of numerous vesicles of ˜50-150 nm, suggesting that these vesicles are the putative active complexes in the secretion (FIG. 11).
  • The hypothesis is supported by the observation that when the Conditioned Medium is ultracentrifuged of 200,000×g for an hour, the pellet when assayed by LC/LC-MS as previously described20 contained at least 70% of the proteins found in the secretion.
    • Example 22 Results: Lipid Composition of Conditioned Medium
  • To analyze the lipid composition of the Conditioned Medium, the hydrophobic lipid/steroid components of Conditioned Medium and NCM are extracted by Folch procedure. Briefly, 50 ml of Conditioned Medium or NCM is vigorously mixed with 5 ml of chloroform and 2 ml of methanol. The organic and aqueous phases are allowed to separate. The bottom chloroform layer is removed and evaporated to dryness by speedvac.
  • The residue is reconstituted in methanol for LC-MS/MS analysis. The sample is then injected to a normal-phase (silica phase) HPLC column with dichloromethane/methanol/water/ethylamine mobile phase. The eluate is then ionized online by nanospray to LTQ-FTMS/Orbitrap. The LTQ-FTMS/Orbitrap is run at alternate positive and negative modes for detection of lipid/steroid with different chemical properties. The top 5 precursor ions of each MS scan are further analyzed by MS/MS scan
  • The molecules are therefore characterized by a combination of FTMS and LTQ. The precursor mass of each tandem mass spectrum is first matched to a candidate in a lipid and metabolic database. MS/MS spectra of ions that have a <5 pmm mass error to any molecule in the database are then compared to known standard spectra or spectra predicted by Mass Frontier program
  • Mass spectrometry analysis of chloroform extract from the Conditioned Medium revealed the presence of lipids commonly found in plasma membrane, namely phospholipids, glycolipids, and steroids and also in exosomes35. The phospholipids include phosphatidyl serine and phosphatidyl inositol, phosphatidyl choline, shingomyelin, ceramides; glycolipid such as cerebroside and steroids such as cholesterol.
  • It has been observed that exosomes has microdomains known as lipid rafts in their lipid membranes22,24-35 41,42. Exosomes are cholesterol-rich and their cholesterol-phospholipid ratio generally exceed the ratio of 0.3-0.4 (mol/mol) ratio found in plasma membrane35. These rafts are characterized by their resistance to dissolution by non-ionic detergents such as Triton X-100 or Brij-98 at low temperatures, and their sensitivity to cyclodextrin that binds cholesterol. Generally insoluble in detergents such as triton X-100 and detergent insolubility is often used to identify the presence of lipid rafts.
  • When the Conditioned Medium is treated with Triton X-100, the secreted proteins continued to segregate as a complex independent of their size fractionation experiments using membrane filtration (FIG. 12), suggesting that the putative complex is resistant to dissolution by triton X-100, consistent with the presence of lipid rafts43.
  • We determine if the complex is sensitive to dissolution in the presence of 20 mM cyclodextrin. If the putative complex has lipid rafts in the membrane, extraction of cholesterol by cyclodextrin caused dissolution and release the proteins which can then be size fractionated according to their molecular sizes. The relative quantitative composition of lipids in the putative complex is estimated using chromatographic and mass spectrometry techniques as previously outlined35. This determines if the lipid composition can support the presence of lipid rafts.
    • Example 23 Results: RNA Composition of Conditioned Medium
  • Trizol extraction of the Conditioned Medium followed by isopropanol precipitation as commonly used in the extraction of RNA from cells produces a pellet that in water has an 260:280 nm absorbance ratio of 1.9, suggesting that it may be RNA.
  • This is consistent with a previous report that exosomes contain mRNAs and microRNAs36. This pellet is assayed for sensitivity to RNase activity. The Conditioned Medium will also treated with RNases before extraction with trizol. These assays determine if the pellet is RNA, and if the RNA is sequestered in lipid vesicles such as exosomes.
  • If so, the RNA is assayed by generic gene expression assays such as microarrary, sequencing, RT-PCR and in vitro translation assays to determine the composition and functions of RNA. The RNAs are translated in vitro using standard commercially available reticulocyte lysate system with and without 15N-leucine. The translated protein products are identified by mass spectrometry.
    • Example 24 Results: Proteomic Profile
  • Of the ˜700 proteins described to be present in the secretion (U.S. Provisional Patent Application No. 60/878,222 and International Application PCT/SG2006/000232. Mesenchymal Stem Cell Conditioned Medium), there are many proteins found to be commonly present in the proteome of other exosomes (FIG. 13)44. There are also many proteins in the list of ˜700 proteins that have not been described to be present in exosomes. Some notable but not exhaustive examples are Thy1, Wnt 5a, Wnt 5b, inhibin A (or activin A)
    • Example 25 Results: Surface Antigen Profile
  • The proteomic profile of the Conditioned Medium also describes the presence of proteins that are known to be membrane-bound. Some notable but not exhaustive examples include CD9, CD109, thy-120. Other known surface antigen of exosome such as CD24 that is found on the surface of exosomes secreted in the urine45 is not expressed in MSCs19 or its secretion20.
  • Additionally, many of these surface antigens are expressed in a cell-type specific manner. Together, these observations suggest that the surface antigen profile will define and distinguish exosomes from different cell source. To characterize the surface antigen profile of these putative secretion complex, the Conditioned Medium is biotinylated using standard commercially available biotinylation kits. The proteins is separated on standard SDS-PAGE, transferred on nylon or nitrocellulose, and probed with avidin-peroxidase using standard protocols in western blot analysis. In this protocol, only proteins that are on the surfaces on the complexes and are physically accessible to biotin are biotinlyated. All the proteins that are within the complex and are therefore not physically accessible are be biotinylated. The biotinylated proteins are also isolated using avidin-affinity chromatography and identify using LC/MS. The identity of these proteins is confirmed by western blot analysis, immunoelectron microscopy and gene expression of MSCs.
    • Example 26 Exosomes
  • Based on the above observations, we hypothesize that the smallest active cardioprotective unit in the Conditioned Medium is an exosome.
  • To prove this hypothesis, we concentrate the Conditioned Medium using membrane filtration technology with membrane of MW cut-off of 100 kD. The concentrated Conditioned Medium is then utlracentrifuged at ˜150-200 000 g for 1-2 hours. The pellet is resuspended in PBS, analysed by electron microscopy to confirm the presence of particles with a size range of 50-150 nm, and assayed for its protein, lipid and RNA contents.
  • The suspension is assayed for the biological activities that are computationally predicted for the Conditioned Medium20, and is tested for cardioprotective effects in the mouse and pig models as described above or below, respectively.
    • Example 27 Study Design for Pig Study
  • Thirty female Dalland Landrace pigs (60-70 kg; IDDLO, Lelystad, The Netherlands), all pretreated with clopidogrel 75 mg/day for 3 days and amiodarone 400 mg/day for 10 days, are randomly assigned to MSC-CM, non-CM, or saline treatment.
  • The saline group is added to assess a potential effect of fresh, non-conditioned culture medium. In all pigs, MI is induced by 75 minutes of proximal left circumflex coronary artery (LCxCA) ligation and 4 hours of subsequent reperfusion. An ischemic period of 75 minutes is selected to inflict severe myocardial injury without inducing completely transmural myocardial infarction. The 4 hour reperfusion period is used, because infarct size measurement using TTC staining is most reliable after 3 hours of reperfusion46.
  • After longer periods of reperfusion, it becomes more difficult to assess oxidative stress status and apoptotic mechanisms. Treatment is initiated 5 minutes before the onset of reperfusion by intravenous infusion of MSC-CM (1.0 ml, 2.0 mg protein) non-CM or saline. Immediately following reperfusion, an additional intracoronary bolus MSC-CM (4.0 ml, 8.0 mg protein), non-CM or saline is given. Myocardial infarct size and function are assessed 4 hours after reperfusion.
  • To identify the factor(s) within the medium that, confer cardioprotection, we used a mouse or pig model of ischemia and reperfusion injury. MI is induced by 30 minutes left coronary artery (LCA) occlusion and subsequent reperfusion. Mice are treated with unfractionated conditioned medium, <1000 kD fraction, <500 kD fraction, <300 fraction kD, <100 kD fraction or saline intravenously via the tail vein, 5 minutes before reperfusion. Infarct size is assessed the following day (24 hours after reperfusion).
    • Example 28 MI and Operational Procedure
  • During the entire operation, ECG, Systemic Arterial Pressure, and capnogram are monitored continuously. Under general anesthesia as described before47, a median sternotomy is performed and two introduction sheets are inserted in the carotid arteries for a 6 Fr guiding catheter and an 8 Fr conductance catheter (CD Leycom, Zoetermeer, the Netherlands).
  • The distal tip of a Swan Ganz catheter is placed into the pulmonary artery via the internal jugular vein. Transonic flow probes (Transonic Systems Inc, Ithaca, N.Y.) are placed around the proximal aorta and LCxCA to measure cardiac output and coronary flow, and a wire is placed around the inferior caval vein to enable functional measurements under varying loading conditions for PV loops. After functional measurements, 10.000 IU of heparin are administered intravenously and sutures are tightened to occlude the proximal LCxCA. Internal defibrillation with 50 J is used when ventricular fibrillation occurred. After 75 minutes of ischemia, the LCxCA is reopened by release of the suture. Immediately following reperfusion, Nitroglycerine (0.1 mg to prevent no-reflow) is infused through the LCxCA via the guiding catheter, followed by intracoronary treatment with MSC-CM, non-CM or saline. After 4 hours of reperfusion, the final functional measurements are performed and the heart is explanted for infarct size analysis.
  • Mice are anesthetized with Fentanyl (0.05 mg/kg), Dormicum (5 mg/kg) and Domitor (0.5 mg/kg) and intubated using a 24-gauge intravenous catheter with a blunt end. Mice are artificially ventilated at a rate of 105 strokes/min using a rodent ventilator with a mixture of O2 and N2O (1:2 vol/vol) to which isoflurane (2.5-3.0% vol/vol) is added. The mouse is placed on a heating pad to maintain the body temperature at 37° C. The chest is opened in the third intercostal space and an 8-0 prolene suture is used to occlude the left coronary artery (LCA) for 30 minutes. The chest is closed and the following day (24 hours later), the hearts are explanted for infarct size analysis.
    • Example 29 Functional Measurements
  • The ECG, arterial pressure and cardiac output, are digitized at a sampling rate of 250 Hz and stored for offline analysis (Leycom CFL-512, CD Leycom). Left ventricular (LV) pressure and volume are measured using the conductance catheter method, as described previously47. LV pressure and volume signals derived from the conductance catheter are displayed and acquired at a 250-Hz sampling rate with a Leycom CFL-512 (CD Leycom).
  • Data are acquired during steady state and during temporal caval vein occlusion, all with the ventilator turned off at end expiration. Analysis of the pressure-volume loops is performed with custom software as described previously48. In addition, short-axis epicardial ultrasound images (Prosound SSD-5000, 5-MHz probe UST-5280-5, Aloka Holding Europe AG, Zug, Switzerland) are obtained at the midpapillary muscle level. Wall thickness (WT) of the infarct area, remote area (septum) and LV internal area (LVia) are measured at end diastole (ED) and end systole (ES).
  • Systolic wall thickening (SWT) is calculated as [(WT(ES)−WT(ED))/WT(ED)]*100%, fractional area shortening (FAS) as [(LVia(ES)−LVia (ED))/LVia (ED)]*100%, and left ventricular ejection fraction (LVEF) as [(EDV−ESV)/EDV]*100%. The end-diastolic chamber stiffness is quantified by means of linear regression of the end-diastolic pressure-volume relationship. Echocardiography and PV loops are measured before MI, 1 hour after ischemia and 4 hours after reperfusion. To challenge stunned myocardium, additional measurements are performed during pharmaceutically induced stress by intravenous dobutamine infusion (2.5 μg/kg/min and 5.0 μg/kg/min).
    • Example 30 Infarct Size
  • Just prior to excision of the heart, the LCxCA (pigs) or LCA (mice) is religated at exactly the same spot as for the induction of the MI. Evans blue dye is infused through the coronary system to delineate the area at risk (AAR). The heart is then excised, the LV is isolated and cut into 5 slices from apex to base.
  • The slices are incubated in 1% triphenyltetrazolium chloride (TTC, Sigma-Aldrich Chemicals, Zwijndrecht, the Netherlands) in 37° C. Sörensen buffer (13.6 g/L KH2PO4+17.8 g/L Na2H PO4.2H2O, pH 7.4) for 15 minutes to discriminate infarct tissue from viable myocardium.
  • All slices are scanned from both sides, and in each slide, the infarct area is compared with area at risk and the total area by use of digital planimetry software (Image J). After correction for the weight of the slices, infarct size is calculated as a percentage of the AAR and of the LV.
    • Example 31 Materials and Methods: Preparation of Conditioned Medium
  • HuES9.E1 cells are cultured as described previously (Lian et al., 2007; Sze et al., 2007).
  • Briefly, 80% confluent HuES9.E1 cell cultures are washed three times with PBS and cultured overnight in a chemically defined medium consisting of DMEM without phenol red (catalog number 31053, Invitrogen) and supplemented with insulin, transferrin, and selenoprotein (ITS) (Invitrogen), 5 ng/ml FGF2 (Invitrogen), 5 ng/ml PDGF AB (Peprotech, Rocky Hill, N.J.), glutamine-penicillin-streptomycin, and b-mercaptoethanol. The cultures are then rinsed three times with PBS, and then fresh defined medium is added.
  • After 3 days, the medium is collected, centrifuged at 500×g and concentrated. >100 kDa CM sample is prepared by concentrating CM 50× using 100 kDa MWCO tangential force filtration (TFF). All other concentrations are performed using ultrafiltration membrane. All CM and other differently processed CMs are 0.2 micron filtered after all procedures and before being stored or used.
    • Example 32 Materials and Methods: LC MS/MS Analysis
  • Proteins in two ml of dialyzed conditioned (CM) or non-conditioned media (NCM) are reduced, alkylated, and tryptic digested as described previously described (Sze et al., 2007). The samples are then desalted by passing the digested mixture through a conditioned Sep-Pak C-18 SPE cartridge (Waters, Milford, Mass., USA), washed twice with a 3% acetonitrile (ACN) (JT Baker, Phillipsburg, N.J.) and 0.1% formic acid (FA) buffer, and eluted with a 70% ACN and 0.1% FA buffer. The eluted samples are then dried to about 10% of their initial volumes by removing organic solvent in a vacuum centrifuge.
  • To reduce the sample complexity, offline peptide fractionation is carried out with a HPLC system (Shimadzu, Japan) through a Polysulfoethyl SCX column (200 mm×4.6 mm) (PolyLC, USA). Mobile phase A (5 mM KH4PO4+30% acetonitrile) and mobile phase B (5 mM KH4PO4+30% acetonitrile+350 mM KCl) at 1 ml/min. Eight fractions are collected and dried with a vacuum centrifuge. Fractionated samples are loaded into the autosampler of a Shimadzu DGU-20A3 C18 reverse phase HPLC system coupled online to a LTQ-FT ultra linear ion trap mass spectrometer (Thermo Electron, San Jose, Calif.) fitted with a nano-spray source. Injected peptides are trapped in a Zorvax 300SB-C18 enrichment column (5 mm×03 mm, Agilent Technologies, Germany) and eluted into a nano-bored C18 packed column (75 μm×100A, Michrom Bioresources, Auburn, Calif.).
  • A 90 minute gradient at 200nl/min flow rate is used to elute the peptides into the mass spectrometer. The LTQ is operated in a data-dependent mode by performing MS/MS scans for the 8 of the most intense peaks from each MS scan in the FTMS. For each experiment, MS/MS (dta) spectra of the eight SCX fractions are combined into a single mascot generic file by a home-written program. Protein identification is achieved by searching the combined data against the IPI human protein database (version 3.34; 67,758 sequences) via an in-house Mascot server (Version 2.2, Matrix Science, UK). The search parameters are: a maximum of 2 missed cleavages using trypsin; fixed modification is carbaminomethylation of cysteine and variable modifications is oxidation of methionine. The mass tolerances are set to 20 ppm and 0.8 Da for peptide precursor and fragment ions respectively. Protein identifications are accepted as true positive if two different peptides are found to be with scores greater than the homology scores.
    • Example 33 Materials and Methods: HPLC Fractionation and Dynamic Light Scattering using a Quasi-Elastic Light Scattering (QELS) Detector
  • The instrument setup consisted of a liquid chromatography system with a binary pump, an auto injector, a thermostated column oven and a UV-visible detector operated by the Class VP software from Shimadzu Corporation (Kyoto, Japan). The Chromatography columns used are TSK Guard column SWXL, 6×40 mm and TSK gel G4000 SWXL, 7.8×300 mm from Tosoh Corporation (Tokyo, Japan). The following detectors, Dawn 8 (light scattering), Optilab (refractive index) and QELS (dynamic light scattering) are connected in series following the UV-visible detector. The last three detectors are from Wyatt Technology Corporation (California, USA) and are operated by the ASTRA software.
  • The components of the sample are separated by size exclusion i.e. the larger molecules will elute before the smaller molecules. The eluent buffer used is 20 mM phosphate buffer with 150 mM of NaCl at pH 7.2. This buffer is filtered through a pore size of 0.1 μm and degassed for 15 minutes before use. The chromatography system is equilibrated at a flow rate of 0.5 ml/min until the signal in Dawn 8 stabilized at around 0.3 detector voltage units. The UV-visible detector is set at 220 nm and the column is oven equilibrated to 25° C. The elution mode is isocratic and the run time is 40 minutes. The volume of sample injected ranged from 50 to 100 μl. The % area of the exosome peak vs. all other peaks is integrated from the UV-visible detector. The hydrodynamic radius, Rh is computed by the QELS and Dawn 8 detectors. The highest count rate (Hz) at the peak apex is taken as the Rh.
  • Peaks of the separated components visualized at 220 nm are collected as fractions for further characterization studies.
    • Example 34 Materials and Methods: Sucrose Gradient Density Equilibrium Centrifugation
  • For sucrose gradient density equilibrium centrifugation, 14 sucrose solutions with concentrations from 22.8-60% (w/v) are prepared. The most concentrated solution is layered at the bottom of SW60Ti ultracentrifuge tube (Beckman Coulter Inc., Fullerton Calif., USA), followed by the next highest sucrose concentration. CM is carefully loaded on top before ultracentrifuged for 16.5 hours at 200,000×g, 4° C. in a SW60Ti rotor (Beckman Coulter Inc.). 16 fractions are collected from top to the bottom of the sucrose gradient. The densities of all the sucrose fractions are calculated using a microbalance, and consolidated into to 13 fractions. For some CM, the CM is pretreated with a cell lysis buffer (Cell Extraction Buffer, Biovision, www.BioVision.com) before being loaded on sucrose gradient density equilibrium centrifugation. The lysis buffer is added to CM in a 1:1 volume ratio with cocktail of protease inhibitors (Halt Protease Inhibitor Cocktail, EDTA-Free, Thermo Scientific, www.thermofisher.com). The mixture is incubated for 30 min at room temperature with gentle shaking.
    • Example 35 Materials and Methods: Protein Quantitation
  • Protein concentration of CM is quantified using NanoOrange Protein Quantification kit (Invitrogen) according to the manufacturer's instructions.
    • Example 36 Materials and Methods: SDS-PAGE and Western Blot Analysis
  • Total proteins of CM are separated on polyacrylamide gels, before transfer to a nitrocellulose membrane (Amersham Biosciences, Uppsala, Sweden). The membrane is blocked, incubated with mouse antibodies against human CD9, CD81, SOD-1, pyruvate kinase, Alix, Tsp-1 followed by horseradish peroxidase-coupled secondary antibodies against the mouse primary antibody. The blot is then incubated with a chemiluminescent HRP substrate to detect bound primary antibody, and therefore the presence of the antigen.
    • Example 37 Materials and Methods: Sphingomyelin, Phosphatidylcholine and Cholesterol Assay
  • Cholesterol, sphingomyelin and phosphatidylcholine concentrations in two independent preparations of CM and pellet from the ultracentrifugation of CM at 100,000×g for 2 hours at 4° C. are measured using commercially available assay kits. Cholesterol is measured using Amplex® Red Cholesterol Assay kit (Molecular Probes, USA), sphingomyelin by the Sphingomyelin Assay Kit (Cayman Chemical Company, Ann Arbor, Mich., USA) and phosphatidylcholine is measured using the Phosphatidylcholine Assay Kit (Cayman Chemical Company, Ann Arbor, Mich., USA).
    • Example 38 Materials and Methods: Limited Trypsinization of Conditioned Medium
  • CM is treated with/without triton x or lysis buffer for 30 min at 4° C. with gentle shaking. Proteolytic digestion is allowed to carry out by adding trypsin to the treated CM for 3 seconds to 20 minutes at room temperature with gentle shaking. The digestion is stopped using a trypsin inhibitor, PMSF.
    • Example 39 Materials and Methods: miRNA Microarray Analysis
  • Two biological replicates of total cellular RNA from MSCs and two biological replicates of secreted RNA from CM are analysed by miRNA microarray. The hybridization and data analysis is outsourced to LC Sciences, LLC (www.LCsciences.com). The chip contained probes for miRNA transcripts listed in Sanger miRBase Release 10.1 (http://www.sanger.ac.uk/Software/Rfam/mirna/).
    • Example 40 Results: Cardoprotective Secretion Contains Exosome-Associated Proteins that Form Multiprotein Complexes
  • To identify the active component, we have previously fractionated the CM by ultrafiltration through membranes with different MWCO. It is shown that when CM is filtered through a membrane with MWCO of 1000 kDa, the filtrate is not protective. However, CM that is concentrated by ˜125 times against a similar membrane is cardioprotective in a mouse model of ischemia/reperfusion injury. In summary, filteration through filters with a MWCO smaller than 0.2 μm such as 100 kDa, 300 kDa, 500 kDa or 1000 kDa are not cardioprotective (FIG. 14) but CM that is concentrated against a 1000 kDa membrane (Timmers et al., 2008) or a 100 kDa membrane is cardioprotective (FIG. 14). These observations suggested then that the active fraction consisted of large complexes of >1000 kDa or having a diameter of 50-100 nm. Based on the size range of the particles, we postulated that the particles in the CM are exosomes. Exosomes are formed from multivesicular bodies (Fevrier and Raposo, 2004; Keller et al., 2006) with a bilipid membrane that has the same orientation as plasma membrane. They are known to be produced by many cell types and are thought to be important in intercellular communications. Exosomes have diameters of 40-100 nm. Exosomes have been shown to be secreted by many cell types and the protein composition of these exosomes appeared to be cell specific. However, some proteins such as CD9, pyruvate kinase and alix appear to be commonly expressed in the exosomes (Sze et al., 2007). We have previously identified about 201 proteins in the secretion (Sze et al., 2007).
  • Here we extended the list to 793 proteins (Table E2) by making modifications to our previously described methodology in our proteomic analysis as detailed in the Materials and Methods. The 793 contained many of the exosome-associated proteins such as CD9, CD81, Alix, TSP-1, SOD-1 and pyruvate kinase (Olver and Vidal, 2007). We confirmed the presence of these proteins in the secretion by western blot analysis (Lane1, FIG. 15). Co-immunoprecipitation of CD81, CD9 and Alix supported their association with an exosome and the presence of exosome in the secretion. TSP-1, SOD-1 and pyruvate kinase did not co-immunoprecipitated with CD81, suggesting that these proteins are not present in CD81+ exosomes or not present in exosomes at all. (FIG. 15).
  • Table E2 (below). Alphabetical list of 739 unique gene products identified by LC-MS/MS and antibody array
  • TABLE E2
    Proteomic profile of CM as determined by LC MS/MS and antibody arrays. Four independent samples were analyzed. Each protien in the
    table was detected by at least 3 of 4 samples.
    02-Sep BPNT1 COL5A3 FAM3C HINT1 ITGB4BP MYH9 PPIA RPLP2 THBS2
    07-Sep BTD COL6A1 FAM49B HIST1H4 K-ALPHA-1 MYL6 PPIB RPS10 THOP1
    AARS C14orf141 COL6A2 FAM62A HIST1H4A KPNB1 NAGK PPP2R1A RPS15A THY1
    ACAA2 C19orf10 COL6A3 FBLN1 HIST1H4B KRT1 NANS PPP2R4 RPS16 TIMP1
    ACAT2 C1orf58 COL7A1 FBLN5 HIST1H4C KRT14 NARS PPP5C RPS19 TIMP2
    ACO1 C1orf78 COPA FBN1 HIST1H4D KRT2 NEDD8 PPP6C RPS2 TIMP3
    ACTB C1QBP COPG FBN2 HIST1H4E KRT27 NEFM PRDX1 RPS20 TKT
    ACTC1 C1R COPS3 FDPS HIST1H4F KRT4 NIT2 PRDX2 RPS23 TLN1
    ACTN1 C1S COPS4 FGF16 HIST1H4H KRT5 NME1 PRDX3 RPS3 TMOD2
    ACTN2 C21orf33 COPS8 FGFRL1 HIST1H4I KRT6L NPC2 PRDX4 RPS4X TMOD3
    ACTN3 CALR CORO1B FH HIST1H4J KRT7 NPEPPS PRDX5 RPS5 TNC
    ACTN4 CAND1 CORO1C FKBP10 HIST1H4K KRT75 NPM1 PRDX6 RPS7 TNFRSF11B
    ACTR1A CAP1 COTL1 FKBP1A HIST1H4L KRT77 NQO1 PRG1 RPS8 TNFRSF12A
    ACTR1B CAP2 CRIP2 FKBP3 HIST2H2AA3 KRT9 NRP1 PRKACA RPS9 TNFSF12
    ACTR2 CAPG CS FLNA HIST2H2AA4 KRTHB4 NRP2 PRKCSH RPSA TNPO1
    ACTR3 CAPN1 CSE1L FLNB HIST2H4A LAMA4 NT5E PRNP RSU1 TP53I3
    ACTR3B CAPN2 CSRP1 FLNC HIST2H4B LAMB1 NUCB1 PROCR RTN4 TPI1
    ADAM9 CAPZA1 CSRP2 FLRT2 HIST4H4 LAMC1 OLFML3 PROSC S100A11 TPM1
    ADSL CAPZA2 CST3 FLT1 HLA-A LANCL1 P4HA1 PRSS23 S100A16 TPM2
    ADSS CAPZB CTGF FN1 HLA-B LAP3 P4HB PRSS3 SARS TPM3
    AEBP1 CARS CTHRC1 FSCN1 HMX1 LASP1 PABPC1 PSAP SDC4 TPM4
    AGA CBR1 CTSB FSTL1 HNRPA1 LDHA PABPC4 PSAT1 SDCBP TRAP1
    AGRN CBR3 CTSD FSTL5 HNRPA1L-2 LDHAL6B PAFAH1B1 PSMA1 SEC22B TRHDE
    AHCY CCBL2 CTSZ FTL HNRPA2B1 LDHB PAFAH1B2 PSMA2 SEC23A TROVE2
    AK1 CCDC19 CXCL1 G6PD HNRPC LEPRE1 PAFAH1B3 PSMA3 SEC31A TSKU
    AK2 CCL18 CXCL12 GALNT2 HNRPCL1 LGALS1 PAICS PSMA6 SEMA3C TUBA1A
    AKR1A1 CCL2 CXCL16 GALNT5 HNRPD LGALS3 PAM PSMA7 SEMA7A TUBA6
    AKR1B1 CCL7 CXCL2 GANAB HNRPDL LGALS3BP PAPPA PSMB1 SERPINB1 TUBA8
    ALCAM CCN4 CXCL9 GAPDH HNRPH2 LMNA PARK7 PSMB2 SERPINB6 TUBB
    ALDH2 CCR4 CYCS GARS HNRPK LOC196463 PARP1 PSMB3 SERPINE1 TUBB2C
    ALDH7A1 CCR5 D4ST1 GAS6 HNRPL LOC283523 PARVA PSMB4 SERPINE2 TUBB3
    ALDOA CCT2 DAG1 GBA HNRPR LOC347701 PCBP1 PSMB5 SERPINF1 TUBB4
    ALDOC CCT3 DCI GBE1 HNRPU LOC646821 PCBP2 PSMD11 SERPINH1 TUBB6
    ANGPT4 CCT4 DCN GDF1 HNT LOC649125 PCDH18 PSMD13 SERPINI2 TUBB8
    ANP32B CCT5 DDAH2 GDF11 HSP90AB1 LOC653214 PCDHGB6 PSMD5 SFRP1 TWF1
    ANXA1 CCT6A DDB1 GDF15 HSP90B1 LOC654188 PCK2 PSMD6 SFRP4 TXN
    ANXA2 CCT7 DDT GDF3 HSPA1A LOC728378 PCMT1 PSMD7 SH3BGRL3 TXNL5
    ANXA5 CCT8 DDX17 GDF5 HSPA1B LOXL2 PCNA PSME1 SIL1 TXNRD1
    ANXA6 CD109 DES GDF8 HSPA1L LRP1 PCOLCE PSME2 SLC1A5 UBE1
    AP1B1 CD248 DKK1 GDI1 HSPA4 LTA PDCD6IP PTBP1 SLC3A2 UBE2L3
    AP1S1 CD44 DLD GDI2 HSPA5 LTA4H PDGFA PTK7 SND1 UBE2N
    AP2A1 CD59 DNAJC3 GLO1 HSPA6 LTB PDGFC PTPRCAP SNRPD1 UBE2V1
    AP2A2 CD81 DPP3 GLRX HSPA8 LTB4DH PDGFRB PTX3 SNRPE UBE3B
    AP2B1 CD9 DPYSL2 GLT8D3 HSPB1 LTBP1 PDIA3 PURA SOD1 UCHL1
    AP3B1 CDC37 DPYSL3 GLUD1 HSPD1 LTBP2 PDIA4 PXDN SPARC UCHL3
    APEX1 CDC42 DSTN GM2A HSPE1 LUM PDIA6 PYCR1 SPOCK UGDH
    API5 CDH11 DYNLL1 GNPDA1 HSPG2 M6PRBP1 PDLIM1 PYGB SPTAN1 UGP2
    APOA1BP CDH13 ECHS1 GNPNAT1 HSPH1 MACF1 PDLIM5 QARS SPTBN1 UROD
    APOE CDH2 ECM1 GOT1 HTRA1 MADH4 PDLIM7 QPCT SPTBN4 USP14
    APP CFL1 EEF1A1 GOT2 IDH1 MAP1B PEPD QSCN6 SRP9 USP5
    APRT CFL2 EEF1A2 GPC1 IFNG... MAPK1 PFN1 RAB11B SRPX VARS
    ARCN1 CHID1 EEF1B2 GPC5 IGF2R MAPRE1 PFN2 RAB1A SRPX2 VASN
    ARHGAP1 CHRDL1 EEF1G GPI IGFBP2 MAT2A PGCP RAB6A SSB VAT1
    ARHGDIA CLEC11A EEF2 GREM1 IGFBP3 MAT2B PGD RAC1 ST13 VCL
    ARPC1A CLIC1 EFEMP2 GRHPR IGFBP4 MCTS1 PGK1 RAN ST6GAL2 VCP
    ARPC1B CLIC4 EIF2S3 GRN IGFBP5 MDH1 PGK2 RANBP5 STAT1 VEGFC
    ARPC2 CLSTN1 EIF3S9 GSN IGFBP7 MDH2 PGLS RARRES2 STC1 VIL2
    ARPC3 CLTC EIF4A1 GSR IGKC MFAP4 PGM1 RARS STC2 VIM
    ARPC4 CLTCL1 EIF4A2 GSS IL13 MGAT5 PGRMC2 RBMX STIP1 VPS26A
    ARTS-1 CLU EMILIN1 GSTK1 IL15 MIF PHGDH RHOA SULF1 VPS35
    ATIC CMPK EML2 GSTO1 IL15RA MMP1 PHPT1 RNASE4 SVEP1 VTN
    ATP5B CNDP2 ENO1 GSTP1 IL1RAP MMP10 PICALM RNH1 SYNCRIP WARS
    ATP6AP1 CNN2 ENO2 GTPBP9 IL2 MMP14 PKM2 RNPEP TAGLN WDR1
    ATP6AP2 CNN3 ENO3 GZMA IL21R MMP2 PLAU RPL10A TAGLN2 WNT5A
    ATP6V1B2 COL12A1 EPPK1 H2AFY IL3 MRC2 PLEC1 RPL11 TALDO1 WNT5B
    ATP6V1G2 COL18A1 EPRS HADH IL6 MRLC2 PLEKHC1 RPL12 TARS XPO1
    B2M COL1A1 ESD HARS IL6ST MSN PLOD1 RPL14 TCN2 YKT6
    B4GALT1 COL1A2 ETF1 HARS2 IL8 MTAP PLOD2 RPL18 TCP1 YWHAB
    BASP1 COL2A1 ETFB hCG_1641617 ILF2 MTPN PLOD3 RPL22 TFPI YWHAE
    BAT1 COL3A1 ETHE1 hCG_2023776 ILF3 MVP PLS1 RPL30 TGFB1 YWHAG
    BBS1 COL4A1 EXT1 HEXA INHBA MXRA5 PLS3 RPL5 TGFB2 YWHAH
    BCAT1 COL4A2 FAH HEXB IQGAP1 MXRA8 PLSCR3 RPL7 TGFBI YWHAQ
    BGN COL5A1 FAHD1 HGF ISOC1 MYH11 POSTN RPLP0 THBS YWHAZ
    BLVRA COL5A2 FAM129B HIBCH ITGA2 MYH14 PPCS RPLP1 THBS1
  • Of the above proteins in Table E2, TIMP1, TIMP2, TNFRSF11B, LGALS3, ALCAM, DCN, SFRP1, GDF15, PDGFC, PTX3, LTBP1, IGFBP2, GREM1, IGFBP7, MIF, MMP1, PLAU, INHBA and THBS1 were identified by LC MS/MS and antibody array, PPIA, HIST1H4, PPIB, HIST1H4A, HIST1H4B, HIST1H4C, HIST1H4D, HIST1H4E, HIST1H4F, HIST1H4H, HIST1H4I, HIST1H4J, HIST1H4K, HIST1H4L, HIST2H2AA3, HIST2H2AA4, HIST2H4A, HIST2H4B, HIST4H4, HLA-A, HLA-B, SDCBP, TUBA1A, TUBA6, TUBA8, GAPDH, TUBB, TUBB2C, TUBB3, TUBB4, TUBB6, TUBB8, HSP90AB1, ANXA1, HSP90B1, ANXA2, ANXA5, ANXA6, PDCD6IP, CD9, CFL1, CLTC, ENO1, PKM2, MSN, and YWHAG are identified by LC MS/MS and at least 4 studies on exosomes secreted by cultured cells. FGF16, FGFRL I, TNFRSF12A, TNFSF12, CXCL1, CCL18, CXCL12, CCL2, CXCL16, CCL7, CXCL2, CCN4, CXCL9, CCR4, CCR5, ANGPT4, GDF1, GDF11, SFRP4, GDF3, GDF5, GDF8, DKK1, LTA, PDGFA, LTB, MADH4, IFNG . . . , GPC5, IGF2R, CHRDL1, GRN, VEGFC, IL13, IL15, EML2, IL15RA, IL1RAP, MMP10, IL2, GZMA, IL21R, IL3, IL6, IL6ST, IL8, HGF and THBS are identified by antibody array. The remaining proteins are identified by LC MS/MS.
    • Example 41 Results: Exosome-Associated Proteins are Localized in Phospholipid Vesicles
  • To verify the presence of exosome in the CM, the CM is ultracentrifuged at 200,000 g for two hours. There is a >200 fold enrichment of CD9 an exosome-associated protein in the pellet with no detectable level of CD9 in the supernatant (FIG. 16). Ultracentrifugation at 100,000 g for one hour is not sufficient to sediment all the CD9 (FIG. 16). Filtration of the CM through a filter with a MWCO of 500 kDa followed by centrifugation of either the filtrate or retentate at 200,000 g for 2 hours generated a pellet in the retentate fraction (FIG. 16). CD9 which had MW of 19 kDa respectively are highly enriched in this pellet. However, this pellet did not confer any cardioprotection in a mouse model of ischemia/reperfusion injury and we postulated that this is due to the need for vigorous vortexing and pipeting to resuspend the pellet. We observed that only a fraction of CD9 sedimented at 100,000 g and 200,000 g for one hour and most sedimented at 200,000 g for two hours. A small fraction sedimented at 200,000 g for four hours. Together, these observations support our hypothesis that the active component is relatively large complex that can be sedimented by ultracentrifugation.
  • To confirm that the exosome-associated proteins are indeed in exosomes i.e. phospholipid vesicles, the CM is fractionated on a sucrose density gradient by equilibrium ultracentrifugation. Like lipid vesicles, the density of exosomes ranges from 1.13 g ml−1 to 1.19 g ml-1 and float on sucrose gradients. Flotation on sucrose gradients readily separate exosomes from contaminating material such as protein aggregates or nucleosomal fragmentst (Thery et al., 2002). Fractions from the sucrose gradient are then analysed for the presence CD9, CD81, Tsp1, SOD-1 and pyruvate kinase along the gradient (FIG. 17A). A notable feature is that the proteins did not sediment to the expected density of proteins that is correlated to their molecular weight. To determine if these apparent densities are due to the proteins being contained in lipid vesicles, CM is treated with a cell lysis buffer (FIG. 17B) before being fractionated on a sucrose density gradient. This pre-treatment with a plasma membrane solubilization reagent restored each of the apparent densities to the expected density of proteins that correlated to their molecular weight. Therefore, the exosome-associated proteins are localized in lipid vesicles, consistent with our exosome hypothesis.
  • To confirm that there are lipid vesicles in the CM, the concentration of sphingomyelin and phosphatidylcholine, the major phospholipids of the plasma membrane, and cholesterol is determined (FIG. 17C). As expected, the relative concentration of these lipids per μg protein is higher in the CM relative to the non-conditioned medium. Furthermore, ultracentrifugation of the CM at 200,000 g for 2 hours significantly increased the concentration of the lipids (FIG. 17C).
    • Example 42 Results: Exosomal Proteins are Either Membrane Bound or Encapsulated
  • As the exosome-associated proteins include many known membrane proteins such as CD9 and cytosolic proteins such as SOD1, we therefore determined if these proteins are similarly localized on the lipid membrane and lumen of the vesicles. CM is subjected to limited trypsinization over time (FIG. 18A). CD9 which has a similar MW as SOD1 is relatively more susceptible to trypsin digest than SOD1. Digestion of SOD1 is observed only after more than 50% of CD9 had been digested (FIG. 18A). Unlike tryptic digestion of SOD1 which generated no detectable intermediates, tryptic digestion of CD9 generated three tryptic peptide intermediates, suggesting that CD9 has domains with different trypsin-sensitivity. Based on the length of peptide intermediates and known tryptic sites of CD9, the three susceptible tryptic peptide intermediates are mapped to the transmembrane or cytoplasmic domains. This suggested that the known extra-cytoplasmic domain of cellular CD9 is similarly exposed on the secreted CD9 and therefore trypsin-sensitive while the trans-membrane and cytoplasmic domain is not exposed and is therefore relatively resistant to tryptic digest. Together, these observations suggested that CD9, a known membrane protein is also membrane-bound in the exosome and is oriented in the same direction as CD9 in the plasma membrane while cytosolic SOD-1 is localized in the lumen and could be digested only when the integrity of the membrane is compromised by the digestion of membrane proteins.
    • Example 43 Results: Presence of Lipid Vesicle Encapsulated RNA in the Secretion of MSCs
  • It is previously reported that RNAs are secreted by cells in exosomes (Smalheiser, 2007; Taylor and Gercel-Taylor, 2008; Valadi et al., 2007). To determine if RNA is present in the cardioprotective secretion, CM is extracted for RNA by Trizol to yield 5-6 ug RNA per mg protein. When separated on a glyoxal-agarose gel (FIG. 19A) or an urea-PAGE (FIG. 19B), the RNA contained undetectable level of 18S and 28S ribosomal RNA with most RNAs being <300 nt. To determine if the stability of the RNA in the secretion is due to its encapsulation within as a phospholipid vesicle as observed for the proteins, the CM is treated with RNase before being extracted for RNA. The RNA yield and the size distribution are similar to that of untreated CM (FIG. 19C), suggesting that the secreted RNAs are protected from RNAse degradation. We next tested the possibility that the RNAs are protected by a lipid membrane, analogous to a cell membrane by treating the CM with a SDS-based cell lysis buffer, cylcodextrin or phospholipase A2. After treatment with one of the four reagents, the CM is exposed to RNAse and then extracted for RNA. Pretreatment with a SDS-based cell lysis buffer resulted in a complete loss of RNAs while treatment with cylcodextrin or phospholipase A2 led to partial degradation and loss of RNAs. These observations suggested that the RNA is protected from RNAse activity by a cholesterol-rich phospholipid membrane such that the membrane is readily dissolved or compromised by a SDS-based cell lysis buffer, a detergent such as TritonX-100 that dissolves lipids, cylcodextrin that chelates and extracts cholesterol or degradation by phospholipase D. We also observed that RNAs of ˜70-100 nt are more sensitive to RNAse III activity than those of smaller MW, suggesting that the larger RNAs are double stranded (FIG. 19D).
    • Example 44 Results: Secreted RNAs are Sequestered in Vesicles
  • Since the RNAs are shown to be in lipid vesicles, we next determined the buoyant density of these vesicles using sucrose gradient equilibrium ultracentrifugation. CM, CM pretreated with lysis buffer or a set of RNA MW markers is loaded onto a sucrose density gradient and ultracentrifuged as described in FIGS. 4 a, b. The gradients are then removed in thirteen fractions and each fraction is then extracted for RNA. The secreted RNAs equilibrated at a density of 1.074-1.1170 g/ml (FIG. 20). In contrast, RNA MW markers exhibited a buoyant density of 1.115-1.1170 g/ml and pretreatment of the CM with lysis buffer before centrifugation caused an increase in density of the secreted RNA to that of RNA MW markers i.e. 1.115-1.145 g/ml (FIG. 20C). These observations are therefore consistent with the RNAs being encapsulated in a lipid vesicle and thus had an apparent density that is much lower than soluble RNA. Pretreatment of the CM with lysis buffer released the RNA and resulted in the RNA sedimenting at the density of RNA markers.
    • Example 45 Results: RNA-containing Vesicles are not in CD81 Containing Exosomes
  • As shown above, CD9, CD81 and Alix are co-immunoprecipitated by anti CD81 antibodies. Here we tested if the RNA also immunoprecipitate with CD81. After immunoprecipitation, the RNA is not present in the precipitate but remained in the supernatant (FIG. 21). Therefore, the secreted RNAs are not sequestered in CD81+, CD81+CD9+, or CD81+CD9+Alix+ vesicles.
    • Example 46 Results: Secreted RNA Contain microRNAs that Include pre-miRNAs
  • It has been reported that exosomes contain microRNAs (Smalheiser, 2007; Taylor and Gercel-Taylor, 2008; Valadi et al., 2007) and as most of the RNAs in the CM are less than 300 nt, we tested the RNA from the MSC and their CM for the presence of microRNAs (miRNAs) by performing a microarray hybridization. 149 miRNA are detected in MSC and 63 are detected in the CM (FIG. 22A, Table E3 below).
  • TABLE E3
    List of miRNAs in MSC and CM as determined by microarray
    hybridization.
    hsa-let-7a hsa-miR-24-2* hsa-miR-98 hsa-miR- hsa-miR- hsa-miR-484
    149* 214
    hsa-let-7b hsa-miR-25 hsa-miR- hsa-miR- hsa-miR- hsa-miR-491-5p
    99a 151-3p 221
    hsa-let-7c hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-503
    26a 99b 151-5p 222
    hsa-let-7d hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-505*
    26b 100 152 320
    hsa-let-7e hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-532-
    27a 103 155 324-5p 5p
    hsa-let-7f hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-574-
    27b 106a 181a 328 3p
    hsa-let-7g hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-574-
    27b* 106b 181a* 330-3p 5p
    hsa-let-7i hsa-miR-28- hsa-miR- hsa-miR- hsa-miR- hsa-miR-575
    3p 107 181a-2* 331-3p
    hsa-miR- hsa-miR-28- hsa-miR- hsa-miR- hsa-miR- hsa-miR-584
    10a 5p 125a-3p 181b 335
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-612
    15a 29a 125a-5p 181c 342-3p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-625
    15b 29c 125b 181d 345
    hsa-miR-16 hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-629
    30a 126 185 361-5p
    hsa-miR-17 hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-638
    30a* 128 186 362-3p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-663
    18a 30b 130a 187* 362-5p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-671-
    18b 30c 130b 191 365 5p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-708
    19b 30d 132 191* 374b
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-744
    20a 30e 137 192 421
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-766
    20b 30e* 140-3p 193a-5p 423-5p
    hsa-miR-21 hsa-miR-31 hsa-miR- hsa-miR- hsa-miR- hsa-miR-768-
    143 195 424 3p
    hsa-miR-22 hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-768-
    31* 145 197 424* 5p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-769-
    22* 34a 145* 199a-3p 425 5p
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-877
    23a 34a* 146a 199a-5p 425*
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-923
    23a* 92a 146b-5p 199b-5p 454
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-940
    23b 92b 148b 210 455-3p
    hsa-miR-24 hsa-miR-93 hsa-miR- hsa-miR- hsa-miR-
    149 212 483-5p
    hsa-let-7b* hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-
    124 296-5p 765 1228 1238
    hsa-let-7d* hsa-miR- hsa-miR- hsa-miR- hsa-miR-
    150* 493* 933 1234
    hsa-miR- hsa-miR- hsa-miR- hsa-miR- hsa-miR-
    122 198 572 1224-5p 1237
  • 47 miRNAs are present in both MSC and CM. These are: hsa-let-7a, hsa-miR-149*, hsa-miR-214, hsa-let-7b, hsa-miR-221, hsa-let-7c, hsa-miR-26a, hsa-miR-151-5p, hsa-miR-222, hsa-let-7d, hsa-miR-100, hsa-miR-320, hsa-let-7e, hsa-miR-103, hsa-let-7f, hsa-miR-181a, hsa-miR-574-3p, hsa-miR-574-5p, hsa-let-71, hsa-miR-107, hsa-miR-575, hsa-miR-125a-5p, hsa-miR-125b, hsa-miR-361-5p, hsa-miR-638, hsa-miR-663, hsa-miR-191, hsa-miR-671-5p, hsa-miR-132, hsa-miR-191*, hsa-miR-193a-5p, hsa-miR-423-5p, hsa-miR-21, hsa-miR-31, hsa-miR-143, hsa-miR-22, hsa-miR-145, hsa-miR-23a, hsa-miR-146a, hsa-miR-425*, hsa-miR-92a, hsa-miR-923, hsa-miR-23b, hsa-miR-940, hsa-miR-24, hsa-miR-149 and hsa-miR-483-5p.
  • 16 miRNAs are detectable in the CM but are present at below detection level in MSCs. These are: hsa-let-7b*, hsa-miR-124, hsa-miR-296-5p, hsa-miR-765, hsa-miR-1228, hsa-miR-1238, hsa-let-7d*, hsa-miR-150*, hsa-miR-493*, hsa-miR-933, hsa-miR-1234, hsa-miR-122, hsa-miR-198, hsa-miR-572, hsa-miR-1224-5p an dhsa-miR-1237.
  • The following miRNAs are present in MSC only: hsa-miR-24-2*, hsa-miR-98, hsa-miR-484, hsa-miR-25, hsa-miR-99a, hsa-miR-151-3p, hsa-miR-491-5p, hsa-miR-99b, hsa-miR-503, hsa-miR-26b, hsa-miR-152, hsa-miR-505*, hsa-miR-27a, hsa-miR-155, hsa-miR-324-5p, hsa-miR-532-5p, hsa-miR-27b, hsa-miR-106a, hsa-miR-328, hsa-let-7g, hsa-miR-27b*, hsa-miR-106b, hsa-miR-181a*, hsa-miR-330-3p, hsa-miR-28-3p, hsa-miR-181a-2*, hsa-miR-331-3p, hsa-miR-10a, hsa-miR-28-5p, hsa-miR-125a-3p, hsa-miR-181b, hsa-miR-335, hsa-miR-584, hsa-miR-15a, hsa-miR-29a, hsa-miR-181c, hsa-miR-342-3p, hsa-miR-612, hsa-miR-15b, hsa-miR-29c, hsa-miR-181d, hsa-miR-345, hsa-miR-625, hsa-miR-16, hsa-miR-30a, hsa-miR-126, hsa-miR-185, hsa-miR-629, hsa-miR-17, hsa-miR-30a*, hsa-miR-128, hsa-miR-186, hsa-miR-362-3p, hsa-miR-18a, hsa-miR-30b, hsa-miR-130a, hsa-miR-187*, hsa-miR-362-5p, hsa-miR-18b, hsa-miR-30c, hsa-miR-130b, hsa-miR-365, hsa-miR-19b, hsa-miR-30d, hsa-miR-374b, hsa-miR-708, hsa-miR-20a, hsa-miR-30e, hsa-miR-137, hsa-miR-192, hsa-miR-421, hsa-miR-744, hsa-miR-20b, hsa-miR-30e*, hsa-miR-140-3p, hsa-miR-766, hsa-miR-195, hsa-miR-424, hsa-miR-768-3p, hsa-miR-31*, hsa-miR-197, hsa-miR-424*, hsa-miR-768-5p, hsa-miR-22*, hsa-miR-34a, hsa-miR-145*, hsa-miR-199a-3p, hsa-miR-425, hsa-miR-769-5p, hsa-miR-34a*, hsa-miR-199a-5p, hsa-miR-877, hsa-miR-23a*, hsa-miR-146b-5p, hsa-miR-199b-5p, hsa-miR-454, hsa-miR-92b, hsa-miR-148b, hsa-miR-210, hsa-miR-455-3p, hsa-miR-93, hsa-miR-212.
  • The microarray analysis also indicated that the CM contained significant levels of anti-guide miRNA (denoted with an asterisk). For example, the relative ratios of let7b to let7b*, let7d to let7d* and miR-191 to miR-191* in CM are much reduced compared to that in the MSCs (FIG. 22B). In cells, cleavage of the stem-loop pre-miRNA generates the mature guide miRNA and the anti-guide miRNA*. The latter is usually degraded in the cell. One possible explanation for the low ratio of guide miRNA to anti-guide miRNA is that microRNAs in the secretion are pre-miRNAs, and not mature RNAs. Consistent with the possibility is our observations that the 70-100 nt RNAs are double-stranded (FIG. 19D). To confirm this finding, real time PCR analysis of reverse transcribed RNAs are performed using primers specific for guide mRNA and pre-miRNA with or without prior treatment with RNAse III. RNAse III treatment will confirm the presence of pre-miRNA by degrading the pre-miRNA and render it undetectable by RT-PCR.
    • Example 47 Results: Cardioprotective Secretion Contains only Particles with Hydrodynamic Radius of 45-55 nm in the Detectable Range of 1-1000 nm
  • To confirm that the secretion contained large complexes, CM and NCM is first separated by size exclusion on a HPLC (FIG. 13) and each eluting peak as measured by absorbance at 220 nm is then examined for dynamic light scattering (DLS) using a quasi-elastic light scattering (QELS) detector.
  • Only one eluting peak with a retention time of 11-13 minutes exhibited dynamic light scattering and the rh of particles in this peak is about 45-55 nm. The other eluting peaks with a retention time of 13-16 and 17-19 minutes did not exhibit dynamic light scattering. Since the rh detection range of DLS is from 1 to 1000 nm in and the diameter of a DNA alpha helix is 2 nm, globular proteins is 1-10 nm, nuclear pore (50 nm), large virus (100 nm) and mitochondrion is 3 μM, DLS is therefore capable of detecting most biological particles.
  • Based on our observation that that cardioprotection is associated with a fraction that has MW of >1000 kDa, we hypothesize that the eluting peak at a retention time of 12 minutes is the active component.
  • To confirm this, this eluting peak are harvested and tested in a mouse model of myocardial ischemia/reperfusion injury as previously described above and in (Timmers et al., 2008).
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  • Each of the applications and patents mentioned in this document, and each document cited or referenced in each of the above applications and patents, including during the prosecution of each of the applications and patents (“application cited documents”) and any manufacturer's instructions or catalogues for any products cited or mentioned in each of the applications and patents and in any of the application cited documents, are hereby incorporated herein by reference. Furthermore, all documents cited in this text, and all documents cited or referenced in documents cited in this text, and any manufacturer's instructions or catalogues for any products cited or mentioned in this text, are hereby incorporated herein by reference.
  • Various modifications and variations of the described methods and system of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific preferred embodiments, it should be understood that the invention as claimed should not be unduly limited to such specific embodiments and that many modifications and additions thereto may be made within the scope of the invention. Indeed, various modifications of the described modes for carrying out the invention which are obvious to those skilled in molecular biology or related fields are intended to be within the scope of the claims. Furthermore, various combinations of the features of the following dependent claims can be made with the features of the independent claims without departing from the scope of the present invention.

Claims (26)

1. An exosome isolated from a mesenchymal stem cell and having a size of between 50 nm and 100 nm as determined by electron microscopy, the exosome comprising at least one biological property of a mesenchymal stem cell.
2. The exosome of claim 1, which reduces infarct size when assayed in a mouse or pig model of myocardial ischemia and reperfusion injury, or which reduces oxidative stress when assayed in an in vitro assay of hydrogen peroxide (H2O2)-induced cell death.
3. The exosome of claim 1, in which the exosome comprises at least 70% of proteins in an mesenchymal stem cell conditioned medium (MSC-CM) listed in Table D1 or E2 or are gene products of the genes listed in Table D2, or in which the exosome comprises one or more miRNAs listed in Table E3.
4. The exosome of claim 1, in which the exosome comprises: (a) a complex of molecular weight >100 kDa; (b) a complex of molecular weight >300 kDa; or (c) a complex of molecular weight >1000 kDa.
5. The exosome of claim 1, in which the exosome has a size of between 2 nm and 200 nm, as determined by filtration against a 0.2 μM filter and concentration against a membrane with a molecular weight cut-off of 10 kDa, or a hydrodynamic radius of below 100 nm as determined by laser diffraction or dynamic light scattering.
6. The exosome of claim 1, in which the exosome comprises a lipid selected from the group consisting of: phospholipid, phosphatidyl serine, phosphatidyl inositol, phosphatidyl choline, shingomyelin, ceramides, glycolipid, cerebroside, steroids, and cholesterol.
7. The exosome of claim 4, in which the exosome comprises a lipid raft, or in which the exosome is insoluble in non-ionic detergent, or in which the exosome is such that proteins of the molecular weights specified in claim 4 substantially remain in the complexes of the molecular weights specified in claim 4 when the exosome is treated with a non-ionic detergent, or in which the exosome is sensitive to cyclodextrin, such that treatment with cyclodextrin causes substantial dissolution of the complexes specified in claim 4.
8. The exosome of claim 1, in which the exosome comprises ribonucleic acid (RNA), or in which the exosome comprises a surface antigen selected from the group consisting of: CD9, CD109 and thy-1.
9. A method of producing an exosome of claim 1, the method comprising isolating the exosome from a mesenchymal stem cell conditioned medium (MSC-CM), the method optionally comprising separating the exosome from other components based on molecular weight, size, shape, composition or biological activity.
10. A method of producing an exosome of claim 1, the method comprising:
(a) obtaining a mesenchymal stem cell conditioned medium (MSC-CM);
(b) concentrating the mesenchymal stem cell conditioned medium;
(c) subjecting the concentrated mesenchymal stem cell conditioned medium to size exclusion chromatography; and
(d) selecting UV absorbent fractions at 220 nm, that exhibit dynamic light scattering;
in which step (d) comprises collecting fractions which elute with a retention time of 11-13 minutes.
11. A pharmaceutical composition comprising an exosome of claim 1 together with a pharmaceutically acceptable excipient, diluent or carrier.
12. (canceled)
13. (canceled)
14. (canceled)
15. (canceled)
16. A delivery system for delivering an exosome according to claim 1, comprising a source of exosome together with a dispenser operable to deliver the exosome to a target.
17. (canceled)
18. The exosome of claim 1, wherein said biological activity comprises a biological activity of a mesenchymal stem cell conditioned medium (MSC-CM).
19. The exosome of claim 1, wherein said biological activity comprises cardioprotection, reduction of oxidative stress or reduction in cardiac infarct size.
20. The exosome of claim 5, which has a size between 50 nm and 150 nm.
21. The exosome of claim 5, which has a hydrodynamic radius between about 30 nm and about 70 nm.
22. The exosome of claim 6, which has a cholesterol-phospholipid ratio greater than 0.3-0.4 (mol/mol).
23. A method for the treatment of a disease treatable by regenerative therapy in an individual in need thereof, the method comprising administering a pharmaceutical composition of claim 11 to said individual, whereby said disease is treated.
24. The method of claim 23, wherein said disease is selected from the group consisting of: cardiac failure, bone marrow disease, skin disease, burns and degenerative diseases such as diabetes, Alzheimer's disease, Parkinson's disease, cancer, myocardial infarction, a cutaneous wound, a dermatologic disorder, a dermatological lesion, dermatitis, psoriasis, condyloma, verruca, hemangioma, keloid, skin cancer, atopic dermatitis, Behcet disease, chronic granulomatous disease, cutaneous T cell lymphoma, ulceration, a pathological condition characterised by initial injury inducing inflammation and immune dysregulation leading to chronic tissue remodeling including fibrosis and loss of function, renal ischemic injury, cystic fibrosis, sinusitis and rhinitis or an orthopedic disease.
25. The method of claim 23, wherein said disease comprises heart disease.
26. A method of delivering an exosome of claim 1 to a target cell or tissue, the method comprising providing an exosome delivery system comprising a source of exosome together with a dispenser operable to deliver the exosome to a target, and delivery of said exosome to said target using said delivery system.
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